RNA id: AMCG00020333


Basic Information

Item Value
RNA id AMCG00020333
length 3594
RNA type mRNA
GC content 0.53
exon number 5
gene id AMCG00020333
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16625238 ~ 16631859 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTCTTCCTCCATGACTCCTGCATGACTCCCTACAGACCACAGCTGCTACTAACCTGCGtgttatataataatgtacattttaatgcgGCTGATACTTGATTAAttgatcattgtatttaatatggTGGAAAGTGTGTAATTTACAATACCAGGAAACACCCAGACTGCTTTGCAAGCCCGGCGCGGAGAAGGCGGGGTTTGTTTCTGTGTCGGCGCGGGTATGTGTTCACAACGCGGTGCCCGGGACAGTGCCCGTTACCCGCACCATCCGCACCGGCTGTGCCACTTGCGCCAACACTAGTTTAGCCGGGGTTAGGCAGCTCTCGCCCCGGTCTCTCCAACAAGACGTCGGGTGTTTGGTTGTCGATGTGCATTTTGCGGAAGTGTGTGGAGTGTGTTGTTCCCCAGCCGGCCGGCCGTGATACCGGTCTGGGGCCCCGATAGCTGGACCTGTTTTTCGAGTCATTCGCAGACGCCGGCAGTGAAGCAACCCTGACTCGGGCTTTTCCGCCAGGTCTCGCCCGTCTCTGACCCGGCAGCCCATGATCATGTACAGCCTGCGGGAGCTGTCCCTGGAGGCCAAGGTGGCGGTGGGCTCCGGGGTGGTGTTCTTCTCCATGCTCATCTCCCGGACCCTGATATCCGAGAGTGTGGATATGGACACCAGGGCGGCGTTGTACCGGGCGCAGTTCCTGCTCTTCATCAACTCGGTCATGCTGATTGCCTCGCTGTACGTTTGGAGGCGGATGACTGGCAACCTTTGCCGGGTGAGGAGGGTCTCCCAGCGGCTCCTGCGCTGCTGGAAGATGCTGGTGCTGCTGTTCCTGGTGTTGAGCCACTCCAGCTACGTCACCATGTTTTACCTGGTGGCAGAAGAGCCCCACTGGGTCGCCATGCTTTCATTCACCTGTCTGGGCTCTTACAtcatccttttgtttttcctcttcctGTTCAGCTGCGTGGAGCAATGCCACAGGCTGGTCACCAGGAGGGCGGCAGTGTCGGACACATCCACAGCCGACAGCGGCTCCAGAGCAAAAGTCGCCCTGGCCTTGGCCCTGACCCTGGTGCTGACCGCGCTTGGGCTCCTGAACGCCGCCCGCCCCCCCGTGGTCGTGCGTGTCGAGGTCCCCGTGGACAAACTGAGCCCCTCTTTTGATAACCTGAAATTGGTTTTGTTGTCGGACATCCACCTGGGCCCCACGGTGGGGAAGAGCCGGCTGGAGATGGTCGTGGCGATGGTGAACGAACTGCAGCCAGACATCGTGGTGATCGTAGGCGACCTGGCTGACTCCCAGGTGTCTCGGCTGAAGAGCGTGGCGGAGCCTCTGCGCAGGATGGGCTCCAGACTGGGCACCTTCTTTGTCACAGGTAACCACGATTACTACACCGCAGACGTGGACAGCTGGTTGGGGTACCTCAGAACGCTGAACGTGATGCCCCTGCACAATGCCAATGCCCGGATCTCGGCATCCGAGCAGAGCAAGGAGTGGTACCCCGGTCACGGTATGGACCTGACACGGGCGCTGTCCGGCTGTGACCCTGACAGAGCCATCATCCTCCTGGCTCACCAGCCGCTGGCCGCCAAGAGAGCCCTGCAGGAGCGGCCCGAGATCAGCCTGGTCCTGTCAGGTCACACCCACGCTGGCCAGATCTTCCCCCTGAGCATCATGGCGTACCTGGTGAACCCGTTTTTCTCAGGGCTGTACCGCGTGGGCAACCGCAGCTTCGTCTATGTAACACCTGGCACCGTGTACTACGGCATCCCCATGCGGATCGGCAGCACAGCGCAGATCACAGAGATCATCCTGAAGACACCCTGAGGACCGCAACACTCAACATGTAACACGCACACATGTACTGAGCTCTCAGAtccatatttttgttattgttgtattgtatacTGTTTTTTCCAGATGACTTTAGCACTGTGAAAATATCTGCTCCATGGCGATTGGAGGAAGCTTTTAGAGTATCCCGTCTGCTGTCCTGACTGAGGGAGGAAActcaccccccacaccccccagcCCACTCACTAGCAGTAACTGAGGCTCTTATTGTGCAGACCACAGAGTTCTACTGGAATGTCCAGACTCTCACCATTCCGTCCATTCCTCACTATGACATCACAGCCGACTCTTCCCAGTGTGTTCTGCATTCCACAGTAGTGAGGACAGGGAAGCTACctagatttatgtatttaagtatttatttaaactttcaaGAACTTCTGGTACTTTAGGTATTTTAATATAGAGTTCCTGAATTACTGATTCATGACAGAAAGACCTTTTAGGTCCCTTCACTTTTGACGTGGCTTGTTGACACAGTCCAGCCCGATGCCCAGTCGTCTCTGGTTTCCTCCTTCCAGATGTTCAGCACACGATTCACTCAGGGTGTAGTCTTTTCTTGACGGTTGGTTCTGGGTACAGGTATGCAAAGGCCAGTTCTATGGGATGCCTGTAGCTGAAGGTGGGGGGTGTTTGGAGCTGACAGTATCAAACTATTGCTGTTCCTGGTCTGGAGGCCAAAGTGTCATTGGGCACACCGCACCCCCTGAACTCACCCTTTCTGTGCAGGTGTGGGTCGGCCTCCTGCTATAGTTGGGCCAGACTTTGGTGAGGTATCGTCGTGGTGACCTTATAAAATTGTGTATGAAGTACAGATGACAAGCCATGATTGTGAAAATGATTGTGAAAGTGTGTCCgtgtgattgtgagtgtgtgtgtgtatgtgcacatCTGAGGGGTCTGACTGCTAAAAACAGCGAGTGCAAATGCAGACTGGGAACCCTGCTGCCTGGTGTAGCCAAAATGATAACACTCCACTTTGGGTaggatggacagagagagaagagaggaaggGCATAAACTCTGGGAGCGTGTATAGGCGAGAGTTTTCAGAGCTCTATTCTCATGGTTTTCATGATAATCCACACCAGGGTCTGTTATGTGTGGATTTACAGCAGACACACAACATTGTCTGTCCATGGCCTGTTCTTACTCGCACTGTTGGGAAGGGGTTGAGATAGCACTTgccttgtgtatttattgagtGTCTGCTGCCCTGAGCCACAGGAGTTCAGGTCCGTGGTGTGTATGtggaaactgtgtgtgtgaaatgccTGGGATATACATTTTGGATGAGTGTTTCCTGATGTTCCCCAAAAGCGTTATGTctttatgtctttttttaatttttgtattgtactgcactCTTTCCTTAAGAGTTTTAGCTTTAAAAGCACAGTCTCACACCactcaattgtttttttattattattatgattcatCTTTTAAATGTTGAGGTTGTGACTGGGTGTATTCCTTctttgcgccctatgcctgccgggatcggatctggcttccccacgacccttaccaggataagcggtttcgaaaatggatggctGTTAAGGTTGCCCTAGGCGCAGTACTGCCCGTCTGGTCTGTAAGGTCAGTGATGCAATGCCAGCCTGTGTCAAGGTCTGCCATAAGGGCTCACTAAGGGTTCATGGTGTCTGAAGTGTGTGGGAGAACCGGGAGGATCCTGCTGTCctgtgtgaaataataataaagcattttcttatttta

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78319 lncRNA downstream 7659 16616394 ~ 16617579 (-) False AMCG00020336
TU78317 lncRNA downstream 7817 16616323 ~ 16617421 (-) False AMCG00020336
TU78318 lncRNA downstream 7817 16616394 ~ 16617421 (-) False AMCG00020336
TU78228 lncRNA downstream 144248 16480530 ~ 16480990 (-) True G62475
TU77990 lncRNA downstream 1201664 15423155 ~ 15423574 (-) True G62283
TU78347 lncRNA upstream 37038 16668897 ~ 16669511 (-) True G62580
TU78350 lncRNA upstream 47997 16679856 ~ 16680624 (-) True G62582
TU78418 lncRNA upstream 182455 16814314 ~ 16815372 (-) False AMCG00020346
TU78435 lncRNA upstream 265011 16896870 ~ 16923733 (-) True G62655
TU78440 lncRNA upstream 355460 16987319 ~ 16989284 (-) True G62659
AMCG00020336 mRNA downstream 268 16617574 ~ 16624970 (-) True AMCG00020336
AMCG00020337 mRNA downstream 10582 16605616 ~ 16614656 (-) True AMCG00020337
AMCG00020329 mRNA downstream 55638 16558542 ~ 16569600 (-) True AMCG00020329
AMCG00020328 mRNA downstream 76690 16534696 ~ 16548548 (-) True AMCG00020328
AMCG00020324 mRNA downstream 145605 16474273 ~ 16479633 (-) True AMCG00020324
AMCG00020335 mRNA upstream 9145 16641004 ~ 16644491 (-) True AMCG00020335
AMCG00020334 mRNA upstream 15403 16647262 ~ 16663094 (-) True AMCG00020334
AMCG00020340 mRNA upstream 52025 16683884 ~ 16714207 (-) True AMCG00020340
AMCG00020339 mRNA upstream 94719 16726578 ~ 16757369 (-) True AMCG00020339
AMCG00020345 mRNA upstream 130218 16762077 ~ 16768960 (-) True AMCG00020345
TU78161 other downstream 349665 16272451 ~ 16275573 (-) True G62421
TU78153 other downstream 370119 16252788 ~ 16255119 (-) True G62415
TU78145 other downstream 505085 16118989 ~ 16120153 (-) True G62409
TU78130 other downstream 522499 16098900 ~ 16102739 (-) False AMCG00020316
TU78391 other upstream 161007 16792866 ~ 16793167 (-) True G62618
TU78680 other upstream 978805 17610664 ~ 17626189 (-) True G62853
TU78823 other upstream 1362685 17994544 ~ 17997017 (-) False AMCG00020403
TU78814 other upstream 1374309 18006168 ~ 18015860 (-) True G62961
TU78822 other upstream 1405183 18037042 ~ 18039960 (-) False G62961

Expression Profile