RNA id: AMCG00020334


Basic Information

Item Value
RNA id AMCG00020334
length 2547
RNA type mRNA
GC content 0.57
exon number 15
gene id AMCG00020334
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16647262 ~ 16663094 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAATAGTTCCTACACTGACGTCATCACCCCTCACCGCCTGACTCTGAGGAACCGAgaagggggggggaagaaaaaccTTTTGATTACCGGGATCACCACTCTACATCGGTTTACCGGCAGACACGCCGTTTCTCCAGCGTcaagacaaacaaaagagaACCCGAAAACGGCCGGGGAGGTGTGTGCGTGATACTCCAAGAGGAAGGGGGGGCGACATTGTAAACGTTGCCATTTACTGCCGGTTCGAATAAACTTACAAgacttcccttccaccggagaGGCCTGCTTCAGAGAGCCATCCCCGGGGGTAGAGTGGGGAGCGCACGCCGAGGATCTCCGCTGTCCGCAGGGTGTCGATTCCGAAACCCTGGCTGATGAGGACGTGGGCAGATGATGCTTGATCGCGCATCTGCTGTCGCCCGGCTCGCTGTCCCGCTCCCGACGAATGGCGACACCATGATTGACATACCGCTCGGGCTTGTCAAGAGATGGTCCTGTAAACTCTCTAAATGATCGTAGCTGCCTGGCTTGTATTCTGTGCCAGCAGGAGCCTTGCGCGCAGTCTGCTGCTAACACTAGAGCTGCACTTGTTAAGGTTTTGGGAAACTTCGGCAGCTGGGACCATGGGCAACAGCTGCGTGTGCAGGGAGGAGAGCGACGTGGAAGACGTCCCGGCGCCGCACGGACAGCTGCGACCCGTGGACCCCCACTCCGCCGCCGAGCCGGAGAGCCGCAGCCGGCCCAGAGACCCCGTGAGACCGCCCCGACGCGGCCGGGGCCCCCACGAACCCAggagaaaaaagcaaaatgttgaCGGGCTGGTGCTGGATACGCTGGCTGTGATCAGGACCCTAGTGGACAATGACCAGGAGCCCCCCTACTCGATGATCACCTTGCATGAAATGGCAGAGACGGATGATGGCTGGCTGGAAGTGGTCCAGTCTCTGATCAGAGTGATTCCACTGGAGGATCCTCTGGGTCCAGCTGTCATTACTCTGTTACTCGACGAGTGCCCACTGCCAACCAAAGACGCATTGCAAAAGCTTTCCGAGATGCTGAATCTGAGTGGCGCGGTCGCACGTCAGGACGCCACCATTCCCGCCAAACACCGGAACACCACCGCCGTCCTGGGATGCCTAGCGGAGAAACTGGCAGGTCCAGCCAGCATTGGCCTTCTCAGCCCAGGGACTCTGGAGTACCTGTTGGAAAGCCTGAGCTCTGAAGCTCATCCCACCGTGATGCTCTTTGCCCTCATTGCACTTGAGAAGTTTTCACAGACAAgTGAGAACAAGCTGACAGTCTCAGAGTCCTGCATCAGTGACCGGCTCATGATGCTGGAGACCTGGGCCAACCACACGGACTTCCTGAAGCGCCAAGTTGGATTCTGCGCCCAGTGGAGTCTGGACAATCTCTTTCTGAAAGAGGGACGACAGTTTACCTATGAGAAAGTCAACCTGAACAACATCAACGCCATGTTAAACAGCAACGACGTCAGCGAGTATCTCAAAATCTCACCCAACGGGTTGGAGGCGCGTTGCGATGCCTCCTCTTTTGAGAGTGTGCGGTGCACATTCTGCGTAGACTCGGGAGTCTGGTACTATGAGGTCACGGTCATAACTTCAGGAGTCATGCAGATCGGCTGGGCCACGAAAGACAGTAAATTCCTGAACCATGAGGGCTATGGGATAGGCGACGATGAGTACTCCTGTGCGTACGATGGCTGCCGGCAGCTGATCTGGTACAATGCGCGGAGTAAACCGCACAATCATCCCTGCTGGAAGGAAGGTGACACAATAGGATTCCTGCTGGACCTGAGTAAGAAGCAGATGATTTTCTACTTAAATGGCAACCAGCTTCCCCCAGAGAAACAAGTGTTTTCCTCGGCCACGTCAGGCTTTTTTGCAGCTGCAAGTTTCATGTCTTACCAACAATGTGAGTTCAACTTCGGAGCAAAGCCCTTCAGACACCAGCCTCCTGTGAAATTCAGCACTTTCAATGACTATGCCTCCCTGGAGTCAGATGAGAAGATCATATTACCCAGgcatcGGCGATTGGCTCTGCTGAAACAAGTGAGCATCAGAGACAACTGCTGCACGCTGTGCTGTGATCAGATGGCCGATACCGAGCTCAGGCCCTGCGGGCACAGCGGCATGTGTATGGAGTGTGCCTTCCTGCTGGAGACCTGCCCCCTGTGCCGACAGTTCATCAACACCAGAGTGAGACTGATCTCGCACGTCTCCTGACACCAGGGACCgctcccctgccccccctcGGCCCCCAGACCCACCCCCCCGCCGGCCCTTTCAGCGTGACGCCTGCGCAGGGCCCAGGATGGCGACGCCGCTCGAGACCAACCCGCGCGCGACGCTGGCAGAATGCCCGCCTCGTCTGCCGACACCTTTCCCTGTAAAACTGTGAGCTCGCCTTGACCAGCGCAGGGTGACGACACGGAGGCCTGGCAGGGGCAGAGGGCTCTAGAGAGCACAACCAGGCAGGGGGAGGTAGTGGGGGTGGGGTCACGCTAGTCTGCAGATCTTGGTCCTCCCC

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K23332 RSPRY1; RING finger and SPRY domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78319 lncRNA downstream 29683 16616394 ~ 16617579 (-) False AMCG00020336
TU78317 lncRNA downstream 29841 16616323 ~ 16617421 (-) False AMCG00020336
TU78318 lncRNA downstream 29841 16616394 ~ 16617421 (-) False AMCG00020336
TU78228 lncRNA downstream 166272 16480530 ~ 16480990 (-) True G62475
TU77990 lncRNA downstream 1223688 15423155 ~ 15423574 (-) True G62283
TU78347 lncRNA upstream 5803 16668897 ~ 16669511 (-) True G62580
TU78350 lncRNA upstream 16762 16679856 ~ 16680624 (-) True G62582
TU78418 lncRNA upstream 151220 16814314 ~ 16815372 (-) False AMCG00020346
TU78435 lncRNA upstream 233776 16896870 ~ 16923733 (-) True G62655
TU78440 lncRNA upstream 324225 16987319 ~ 16989284 (-) True G62659
AMCG00020335 mRNA downstream 2771 16641004 ~ 16644491 (-) True AMCG00020335
AMCG00020333 mRNA downstream 15403 16625238 ~ 16631859 (-) True AMCG00020333
AMCG00020336 mRNA downstream 22292 16617574 ~ 16624970 (-) True AMCG00020336
AMCG00020337 mRNA downstream 32606 16605616 ~ 16614656 (-) True AMCG00020337
AMCG00020329 mRNA downstream 77662 16558542 ~ 16569600 (-) True AMCG00020329
AMCG00020340 mRNA upstream 20790 16683884 ~ 16714207 (-) True AMCG00020340
AMCG00020339 mRNA upstream 63484 16726578 ~ 16757369 (-) True AMCG00020339
AMCG00020345 mRNA upstream 98983 16762077 ~ 16768960 (-) True AMCG00020345
AMCG00020348 mRNA upstream 107228 16770322 ~ 16778622 (-) True AMCG00020348
AMCG00020347 mRNA upstream 115909 16779003 ~ 16791282 (-) True AMCG00020347
TU78161 other downstream 371689 16272451 ~ 16275573 (-) True G62421
TU78153 other downstream 392143 16252788 ~ 16255119 (-) True G62415
TU78145 other downstream 527109 16118989 ~ 16120153 (-) True G62409
TU78130 other downstream 544523 16098900 ~ 16102739 (-) False AMCG00020316
TU78391 other upstream 129772 16792866 ~ 16793167 (-) True G62618
TU78680 other upstream 947570 17610664 ~ 17626189 (-) True G62853
TU78823 other upstream 1331450 17994544 ~ 17997017 (-) False AMCG00020403
TU78814 other upstream 1343074 18006168 ~ 18015860 (-) True G62961
TU78822 other upstream 1373948 18037042 ~ 18039960 (-) False G62961

Expression Profile