RNA id: AMCG00020335


Basic Information

Item Value
RNA id AMCG00020335
length 1696
RNA type mRNA
GC content 0.47
exon number 7
gene id AMCG00020335
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16641004 ~ 16644491 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGGGGGGGACGGTTGTTTCGTTGCTGTGGAGTCGTTTGTATGAAAAGCTGTGCAGGCTGGGAGGATGGCTGCCAGAGACAGAACGGGGCCCCGGGGGTTGCTCGGGCCCTCACGGGTTTCTCTTGTTTTGTCTTCTCGCTGAAGTTTTGTTCGGTGGCGATGATGCGGTTGAAATGGAGGACTTGGAGGAAGATGATTTTGCAGTTTCAAATTCCTCCGAGGCGGACGCGGAGTTTGATGCGGTGGTCGGGAACATTGAGGACATAATTATGGACGCAGAGTTCCAGCAGCTGCAGCGGAGCTTCATGGAGAAGTACTACCTGGAGTTTGAGGACTCGGAGGAGAACAAGCTCAGCTACACGCCCATCTTCAATGAATACATTGACCTGCTGGAGAAGTTCATTGAACAGCAGCTGGTGAAGAGGGTGCCGGGCTTCAGTATGACCTCCTTCACAGCATCACTGAAGCAACACAAGGATGAAATTTCAGGGGACATCTTTGACATGTTGTTAACCTTCACTGACTTCCTGGCTTTCAAGGAAATGTTTGTGGATTACAGAGCTGTGAGTAAAGCACTGATCCTGCAATTCATAGGGAAGCTGAATGAGAGAAAGAAGGCCGTGGGCTGGACCTCAGCAGTGGGCTGGTAGTGAAATCATTAACGGCTTCCTCTTCAACATCATTGACTGCAAACTGTCCTTCACCTCTCCAGTGACCtcccacatgcacacaaacacacacatacagaaatagagaaatgcacacacacacgtatacataCAGTCACACATCCCCCCAGTAGTCACTCGCACTCTCGCTCACAACACCTGCAGACAGAACAACACCCTCTTCTCTGGAGTCCAGTATAGTCAATTCTCAGCATCATTCAGGTGTCTTTTACCATCATGCATATTGCCGGTGAGCACTTGTGAGCCAGGGTGGGTGGGCACgtgggtgtgtgtataatttTCCACTTCATTTTTAATACCGTTTTCTTTAAACCCCAGTATTCAACCGAAAGgaccaaaatataaacaactCTCTTCCTCTTTGCACATTGTTACAGTTCAGACTCGGGACAAATGGGACTCGGTCTCTCTGCAGTACAGACCATGTGCATGTGTGGATATCGCACATCTCGTTTGGCCTGTGTCTGCGAGGGTGGGAGCAGGTGGAGAATACTGTCCTTGCTAAAGACCTGGCTTCCCGAtaaacccccccaccccaggtcTGTTCCTGCCATTCATGCGATGGAGGAATTATGATCAGTTATTAAATGTGAAGTTCTTTCAGGAGATCTGGTCAGTTAATGCACTTTGATAGAAAGGTCTCCTCGTTGTGGAGGCTGGCTGGTGTTGGACCGATTCCACAGTAATGTTCACAGCATCCATGGCTTTACAGGCacggttttaatttattttatatatgttgttttttactaATCTGTCATTCTCCCATTTATTGTATTAAGGAACCTACAGTGTACTATAGCATTGAAAGGCTGAGGTGCGTCTGTTACAGTGGGTTAGCATGCTCAGACGTCATCTACAGTTTCTCAGGCTGAGTTGTATGTGTAGCTCGGTCTCTGGTTAGTGTTGTCGTTCTGTATTTATaggatgtgtttatttatgtgtaggGCCGAAAGGAGCACCTGCACCTACTTGTGTAAATATGGATGTTTTTGCAATAAAc

Function

GO:

id name namespace
GO:0005758 mitochondrial intermembrane space cellular_component
GO:0005815 microtubule organizing center cellular_component
GO:0005819 spindle cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
K16742 ARL2BP, BART; ADP-ribosylation factor-like protein 2-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78319 lncRNA downstream 23425 16616394 ~ 16617579 (-) False AMCG00020336
TU78317 lncRNA downstream 23583 16616323 ~ 16617421 (-) False AMCG00020336
TU78318 lncRNA downstream 23583 16616394 ~ 16617421 (-) False AMCG00020336
TU78228 lncRNA downstream 160014 16480530 ~ 16480990 (-) True G62475
TU77990 lncRNA downstream 1217430 15423155 ~ 15423574 (-) True G62283
TU78347 lncRNA upstream 24406 16668897 ~ 16669511 (-) True G62580
TU78350 lncRNA upstream 35365 16679856 ~ 16680624 (-) True G62582
TU78418 lncRNA upstream 169823 16814314 ~ 16815372 (-) False AMCG00020346
TU78435 lncRNA upstream 252379 16896870 ~ 16923733 (-) True G62655
TU78440 lncRNA upstream 342828 16987319 ~ 16989284 (-) True G62659
AMCG00020333 mRNA downstream 9145 16625238 ~ 16631859 (-) True AMCG00020333
AMCG00020336 mRNA downstream 16034 16617574 ~ 16624970 (-) True AMCG00020336
AMCG00020337 mRNA downstream 26348 16605616 ~ 16614656 (-) True AMCG00020337
AMCG00020329 mRNA downstream 71404 16558542 ~ 16569600 (-) True AMCG00020329
AMCG00020328 mRNA downstream 92456 16534696 ~ 16548548 (-) True AMCG00020328
AMCG00020334 mRNA upstream 2771 16647262 ~ 16663094 (-) True AMCG00020334
AMCG00020340 mRNA upstream 39393 16683884 ~ 16714207 (-) True AMCG00020340
AMCG00020339 mRNA upstream 82087 16726578 ~ 16757369 (-) True AMCG00020339
AMCG00020345 mRNA upstream 117586 16762077 ~ 16768960 (-) True AMCG00020345
AMCG00020348 mRNA upstream 125831 16770322 ~ 16778622 (-) True AMCG00020348
TU78161 other downstream 365431 16272451 ~ 16275573 (-) True G62421
TU78153 other downstream 385885 16252788 ~ 16255119 (-) True G62415
TU78145 other downstream 520851 16118989 ~ 16120153 (-) True G62409
TU78130 other downstream 538265 16098900 ~ 16102739 (-) False AMCG00020316
TU78391 other upstream 148375 16792866 ~ 16793167 (-) True G62618
TU78680 other upstream 966173 17610664 ~ 17626189 (-) True G62853
TU78823 other upstream 1350053 17994544 ~ 17997017 (-) False AMCG00020403
TU78814 other upstream 1361677 18006168 ~ 18015860 (-) True G62961
TU78822 other upstream 1392551 18037042 ~ 18039960 (-) False G62961

Expression Profile