RNA id: AMCG00020336


Basic Information

Item Value
RNA id AMCG00020336
length 2953
RNA type mRNA
GC content 0.54
exon number 14
gene id AMCG00020336
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16616323 ~ 16624970 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aTGCAGCTGTCTTTAACAGTAACCACACAGCTGCTTGAAAAAGGGCCCCAGCAGGCAGGCGGGACAGAGACCTGCAAGCTCACACAGACGCTGTTGGATGCGGACACTGAGCTGCAGGGCTCAGAGCTGAGAGAGCTGGGGCTGTGTGCCACACGAACACGCCGAGCCACGGACATGACGGAGAACACGGATGTACTGCAACAAGTGGACCTGCAGTGCTGGTCCAATAACCACAGCCACCACACGGCGGAGGTGGACACGGAGCGGCTGCTGCTGCGTCGAGGGCAGCCCTTTACCCTGAGCCTCAGGGTGAACCCCCCGCCCCGGCTCACCCTCGTCCTGCACCTCGGGAAGGATGGGAACACTGTGATCAAGGTGTCTGACTCGTGGGGGTCGGGGAGTGGCTGGTGGTTCAGAAGCGAGTCTGGGCAGGACGAGCTGCTGCTGACCGTGCACAGCCCCCCCGACGCTCCGGTGGGACTGTACCATCTGACCGCTGTGATACTCGACTCGGACGACCTCATCCTGCAGAGCATGCCCCTTGGACAATTCCACCTGCTCTTCAACCCCTGGTGCAAAGATGACTTGGTGTATCTACCAGAAGAGGAGCAGCTCCAGGAGTACATCCTGAACGAGAGCGGGCTGCTGTACCAGGGCTCCTGGGACCAGATCTCTGCAATGCCCTGGGACTTCGGACAGTTCGAGAGGGATGTGGTGGATATTTGCTTCCAAATCCTGGACAAGTCCCCCGCGGCTCAGAGGAACCCGCAAACTGACGCTTTCCGCAGGAGCGACCCGGTGTACGTCAATGCCAATGATGACCTTGGCGTGGTGTCAGGCCGCTGGGACGGGGATTACTCTGATGGCGTGGCACCCACGCGCTGGTCGGGCAGCGTGCCTATCCTCCGGCAGTGGAGCCGCGGCGGGGCCCAGAGGGTGCGCTACGGGCAGTGCTGGGTCTTCTCAGGGGTCGCCTGCACCGTCCTGCGCTGTCTGGGTATCCCCACTCGCTGTGTCACCAACTACTCCTCCGCTCACGACACAGACGGCAACCTGACTGTGGACCTCTACTACAGTGAGCAGCTGGACAGCCTGCCGGGCGGCAAGAAGGATATGATCTGGAATTACCACTGCTGGGTCGAGTCCTGGATGGCGAGGCCAGACCTGCCCCCGGGGTACGACGGCTGGCAGGTGCTGGACCCCACCCCCCAGGAGAGGAGCAATGgaGTGTACTGCTGCGGGCCGTGCCCAGTTCGGGCGATCAAGGAGGGCGACGTGGAGGTGAAGTATGACGTCCCATTCGTGTTCTCAGAGGTCAACGCTGACCTGGTGTGCTGGGTCCTGCACGCGGACGGGCGGCGCTCCCAGGTGTCTCTGCAGCGCCACACAGTGGGCAGGAACATCAGCACCAAGAGCGTGTCTGGGGAGCAGAGGGAGGATCTCACCCAGCACTACAAATACCCTGAGGGCTCGGCAATGGAGAGGCTAGTGTACAAGAAGGCGGGCAGGAAGCTGTCTCTGCCAGACACCTCAGACAGGAAGCTGGAGCTGGGGATCCGGCATGCCCAGGCGGTGCACGGCACTGACTTCGATGTGCTGGTGGAGGTGACCAACCCGAGCGGACAGGACGCCCACGCACACCTCACCATCTCCGCGCTGGCTGTCACCTATAATGGCATCCACCTGGGCGAGTGCCACAGGAAGAGTGTCAGCCTGACCCTGCCCGCCAACATCGCCCACAGGGAGGTGCTGCGGCTACAGTATGAGCATTATGGGAATCGGCTATCCGAGCACCACTTGATCCGGGTCACAGCACTCCTGGAGCCCAACGACGGCCACGACATTGTCCTGCATGAGACCAACATCCCGCTCAGCGTCCCGCAGCTCACTGTGCAGTTGTTTGGAGAGGCTGTAGTGTCTCAGAAGCTGGTGGCCAAGATCACCTTTGTCAACCCGCTACCCATCACTTTGAAGGGGGGCGTGTTCACTGTGGAGGGGGCAGGACTCACACAGGCACAGGAAATACCAGCactGGGGGAGATCCGCCCAGGAGAGGAGGTGTCCATCAAGTTCTCCTTCAAACCCTTCAAGCCAGGCCCCCGAAAGCTGCTGGTGGACTTCGATACGGACCGGCTGAAAGATGTCAAAGGCTTTGCCAAAGTTATAGTGAGGGGCACAAATATGTGAATGGAGAAAGATGCACAcgcttttctttgtttctatATGAagatttaaagttatatataatatctataGAAATACACAATTACAGCCTTGGGGGATGTAGGTAATTTGctggaatatataaaaaaacagctttaatgAAATCTGGACTTCGATTATAGCTGTtggcaacaataataatgacagcTTGTTGGTGGTTATACAGTCTGGTACATGTGACAAATCTTTATGCACTGATTTATGAGCACGACCAGATTCCACACTGCAGATTATATTCTATATACAAAACCATGATAGAGCGGTCTTGATTTTATTATGTGTGGAGCTCTACTTACTAATATTCCCACAGTAGTCATAAACAAGGGCTGacatatacagctctagaaaaaatttagaccactgcattttttccttaaatcagcatctctacatgtatggcagccattcaattccattcatatttgtgtttggaatttgggagaaatgttgtcagtagtttatagaataaagcgaaattgatcattttatccaaacacatacctatacacagtaaaaccagagaaactgttAATGTTGCAGTGgtctccagagctgtatataggtTGAGTTACACTTGGGCCCCCATACATTGAAGTGTGTTGTGTAAATTACtcaaaactaaatgtttttagtgttttcCTCTAAAGTGGCTTTCTGTGAATAAATTCTATTTCAAGTAtaatttttaaaggaaaaaaatcgTGTTTTCTGTGGAAAAAACCCTGCAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78317 lncRNA downstream 153 16616323 ~ 16617421 (-) False AMCG00020336
TU78318 lncRNA downstream 153 16616394 ~ 16617421 (-) False AMCG00020336
TU78228 lncRNA downstream 136584 16480530 ~ 16480990 (-) True G62475
TU77990 lncRNA downstream 1194000 15423155 ~ 15423574 (-) True G62283
TU77869 lncRNA downstream 1583498 15032135 ~ 15034076 (-) True G62191
TU78347 lncRNA upstream 43927 16668897 ~ 16669511 (-) True G62580
TU78350 lncRNA upstream 54886 16679856 ~ 16680624 (-) True G62582
TU78418 lncRNA upstream 189344 16814314 ~ 16815372 (-) False AMCG00020346
TU78435 lncRNA upstream 271900 16896870 ~ 16923733 (-) True G62655
TU78440 lncRNA upstream 362349 16987319 ~ 16989284 (-) True G62659
AMCG00020337 mRNA downstream 2918 16605616 ~ 16614656 (-) True AMCG00020337
AMCG00020329 mRNA downstream 47974 16558542 ~ 16569600 (-) True AMCG00020329
AMCG00020328 mRNA downstream 69026 16534696 ~ 16548548 (-) True AMCG00020328
AMCG00020324 mRNA downstream 137941 16474273 ~ 16479633 (-) True AMCG00020324
AMCG00020325 mRNA downstream 143912 16472584 ~ 16473662 (-) True AMCG00020325
AMCG00020333 mRNA upstream 268 16625238 ~ 16631859 (-) True AMCG00020333
AMCG00020335 mRNA upstream 16034 16641004 ~ 16644491 (-) True AMCG00020335
AMCG00020334 mRNA upstream 22292 16647262 ~ 16663094 (-) True AMCG00020334
AMCG00020340 mRNA upstream 58914 16683884 ~ 16714207 (-) True AMCG00020340
AMCG00020339 mRNA upstream 101608 16726578 ~ 16757369 (-) True AMCG00020339
TU78161 other downstream 342001 16272451 ~ 16275573 (-) True G62421
TU78153 other downstream 362455 16252788 ~ 16255119 (-) True G62415
TU78145 other downstream 497421 16118989 ~ 16120153 (-) True G62409
TU78130 other downstream 514835 16098900 ~ 16102739 (-) False AMCG00020316
TU78391 other upstream 167896 16792866 ~ 16793167 (-) True G62618
TU78680 other upstream 985694 17610664 ~ 17626189 (-) True G62853
TU78823 other upstream 1369574 17994544 ~ 17997017 (-) False AMCG00020403
TU78814 other upstream 1381198 18006168 ~ 18015860 (-) True G62961
TU78822 other upstream 1412072 18037042 ~ 18039960 (-) False G62961

Expression Profile