RNA id: AMCG00020346


Basic Information

Item Value
RNA id AMCG00020346
length 3093
RNA type mRNA
GC content 0.58
exon number 26
gene id AMCG00020346
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16794996 ~ 16817767 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCACAAGCGGCCCTTACCGAGCTCCTCGTTTGCAGGACATTTTGCACACTGGGCGCCTGGGGTGTTGTGCAAAGCCGTGTGCACAGCCGGCCCTCATTGAGCGTGTGTGCGTTTTCGCTTTGCACCCGGTTTCGCCCTGTGAGAGTCGCTATAAATACACAGCAGCGCGGCTGCAGAGTACACACTTCACCCGCACACGActgcatcaaaataaaataaaagaagggaagaaaaaatgGATCCAAAATCCTGCGCATGCTCAAAGACCGGGTCTTGTGACTGCGGGGAGAGCTGCAAGTGCGTGGACTGCAAATGCCAGGGCTGCTGCAAGAAGAAGAgctgctgctcctgctgctcgGCCGGCTGCAGTAAGTGCGCGTCCGGCTGCGTGTGCAAGGGGCAGACCTGCGACACCAGCTGCTGCAAGCGCAGGGGCTTATGGGAGCTGTGTCGTCCAATGAAAGTGCAGCTACGGAAGAGCCGGGAGGAATGTGCGGGCTGTGCGATGGACGGGGAGGGCTTCGgggagctgctgcagcaggCCGAGCAGCTGGCGGCGGAGACGGAGGCAATCTCGGAACTGCCCCATGTGGAGAGGAACCTGCAGGAGATCCAGCAGGCCGGAGAGAGGCTCCGGTCACGCACCCTGACCCGCACCTCACAGGAGACGGCTGATGTGAAGGCctcTATTCTGTTGGGCTCCAGAGGACTGGATATTTTCCACATCTCCCAGCGGTTGGAAAGCTTGAGCGCAGCAACGACTTTTGAACCTTTGGAGCCAGTGAAGGACACAGATATACAGGGCTTCCTGAAGAACGAGCGAGACAATGCGCTGCTGTCAGCCATCGAGGAGTCGCGGCGGAGGacATTCCTGCTGGCGGAGGAGTATCACCGCGAGTCGATGCTTGTGCAGTGGGAGCAGGTGAAACAGCGGGTCCTGCACACCCTGCTGGCCGCTGGGGAGGATGCACTCGACTTCAGCCAGGAGGCAGAGCCCAGCTTCGTGAGTGAAGTGGGGGCTCCTGGCCGCAGTGCCCTGGACAATGTGGAGATGGCCTATGCGAGACAGATTTACGCCTTCAACGAGAAGATCGTGAGCGGGCATCTGCATCCCAACCTGGGGGATTTGTGTGCCTCCGTTGCCGAAAGCCTGGATGACAAGAACGTGATGGACATGTGGACAATGGTGAAACAGATGACCGACGTCCTGCTGGTCCCGGCCAAAGAAACCCTCAAGAGCCGCATTGCTGTGGAAATGGAGATGGGCTTCGTCAGGCAGGCGCTGCAGTTCCTGGAAAACAGCTACAAGACCTACACCATGGTGACGGTGTCTGGGAACCTGTACCAGGCCCAGCTGGGTGGCGTGCCGGGCACTTATCAGCTGGTCCACAGCTTCCTCAACATCAAGCTGCCAGGGCCCATGCCAGGAATGCAGGATGGGGAGGTGGAGGGGCACCCAGTGTGGGCTCTCGTATACTACTGCCTGCGCTGTGGAGACCTGTCCGCTGCCATGCAGGTGGTGAACCGAGCGCAGCACCAGCTGGGCGAGTTCAAGAACTGGTTCCAGGAGTACATGAACAGCCCTGACCGCCGGCTGGCCCCCACCACGGAGAACAAGCTGCGGCTGCATTACAGACGGGTCCTGCGGAACAGCGCTGACCCGTACAAGCGAGCCGTGTACTGTCTGATTGGCAAGTGCGACATCGCTGACAACCACGGGGAGGTGGCCGACAAGACCGAGGACTACCTGTGGCTCAAGCTCAACCAGGTGTGTTTTGAGGACGACACCAGCAGCTCCCCCCAGGACAGGCTGACGCTGCCCCAGCTGCAGAAACAGCTGCTGGAGGACTATGGGGAGTCGCACTTTGCGGCCAACCAGCAGCCCTTACTGTACTTCCAGGTGCTGTTCCTGACTGCGCAGTTCGAGGCGGCCGTGGCGTTCCTCTTCCGGGTGGAGCGTCTGCGCAGTCATGCCGTGCACGTGGCCCTGGTGCTGTACGAGCTGCGACTGCTGCTCAAGTCCTCGGGGCAGAGCGCCCAGCTGTAACATCTTTCTATTGCAGTGAGTCAGGTGCCTGGGGACCCCCCCATGATTAGACGGCTCAATTTCATCCGCTTGCTGATGCTCTACACACGCAAGTTTGAGTCCACGGACCCTAGAGAAGCTCTGCAGTACTTCTATTTCCTGAGGAATGAGAAGGACAGTCAGGGGGAGAGCATGTTCCTGCGCTGTGTCAGTGAGCTGGTGATCGAGAGCCGGGAGtTTGACATGCTGTTAGGTCGGCTGGAGAAGGACGGCAGCAGAAAGCCTGGAGTCATAGATAAATTTGCCGGAGACACCACAGCCATTATAAGCAAAGTTGCGCTTGAAGCCGAGAACAAGGGGCTGTTTGAGGAGGCTGTGAAGCTGTACGAGCTGGCCAAGAATCCCGACAAGGTCTTGGAGCTGATGAATAAGCTGTTGAGCCCCGTGATCTCCCAGGTCAGCGCGCCCCAGTCCAACAAGGAGCGGCTGAAGAACATGGCGCTGGGCATCGCAGAGCGcTATAGGACTCACGGCATAGCTGGAGAGAAGTCTGTGGACAGCACCTTCTACCTCCTGCTGGATCTCATCACATTTTTCGATGAGTACCACGCAGGGCACATCGACAGAGCGTATGACGTGATGGAGCGGTTGAAGCTGGTCCCTTTGAGCCAAGATAGTGTGGAGGCCAGAGTTGCTGCCTTCAGGAATTTCAGTGACGAGGTGCGGCACAACTTGTCGGAGGTGCTGCTGGCCACCATGAACATCCTGTTCACGCAGTACAAGAGGCTGAAGGGGGCCGGTGCCGCCACCCCTGGCCGGCTGCAGCGCTCCATGGAGGACAGGGACTCGGAGCTGCGCAGTCAAGCTCGCGCCCTGATCACCTTTGCTGGAATGATCCCCTACCGCATGGCTGGAGACACCAATGCCAGGCTGGTTCAGATGGAGGTCCTGATGAACTgacttcttctctctctccctttcaaaCCCTCTGTTCTTTTAGGGTAACGCTTCCCCTCCCCCCCGCcagatttctgttttgtatttttcaccaatttaaataaaaaaaa

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005643 nuclear pore cellular_component

KEGG:

id description
K14309 NUP93, NIC96; nuclear pore complex protein Nup93

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78350 lncRNA downstream 114372 16679856 ~ 16680624 (-) True G62582
TU78347 lncRNA downstream 125485 16668897 ~ 16669511 (-) True G62580
TU78319 lncRNA downstream 177417 16616394 ~ 16617579 (-) False AMCG00020336
TU78317 lncRNA downstream 177575 16616323 ~ 16617421 (-) False AMCG00020336
TU78435 lncRNA upstream 79103 16896870 ~ 16923733 (-) True G62655
TU78440 lncRNA upstream 169552 16987319 ~ 16989284 (-) True G62659
TU78445 lncRNA upstream 172500 16990267 ~ 16990714 (-) True G62660
TU78464 lncRNA upstream 201023 17018790 ~ 17019552 (-) True G62675
TU78515 lncRNA upstream 302387 17120154 ~ 17175835 (-) False G62715
AMCG00020347 mRNA downstream 3714 16779003 ~ 16791282 (-) True AMCG00020347
AMCG00020348 mRNA downstream 16374 16770322 ~ 16778622 (-) True AMCG00020348
AMCG00020345 mRNA downstream 26036 16762077 ~ 16768960 (-) True AMCG00020345
AMCG00020339 mRNA downstream 37627 16726578 ~ 16757369 (-) True AMCG00020339
AMCG00020340 mRNA downstream 80789 16683884 ~ 16714207 (-) True AMCG00020340
AMCG00020342 mRNA upstream 11184 16828951 ~ 16841510 (-) True AMCG00020342
AMCG00020344 mRNA upstream 31113 16848880 ~ 16849657 (-) True AMCG00020344
AMCG00020343 mRNA upstream 49465 16867232 ~ 16870178 (-) True AMCG00020343
AMCG00020357 mRNA upstream 177118 16994885 ~ 17000013 (-) True AMCG00020357
AMCG00020356 mRNA upstream 204085 17021852 ~ 17026667 (-) True AMCG00020356
TU78391 other downstream 1829 16792866 ~ 16793167 (-) True G62618
TU78161 other downstream 519423 16272451 ~ 16275573 (-) True G62421
TU78153 other downstream 539877 16252788 ~ 16255119 (-) True G62415
TU78145 other downstream 674843 16118989 ~ 16120153 (-) True G62409
TU78130 other downstream 692257 16098900 ~ 16102739 (-) False AMCG00020316
TU78680 other upstream 792897 17610664 ~ 17626189 (-) True G62853
TU78823 other upstream 1176777 17994544 ~ 17997017 (-) False AMCG00020403
TU78814 other upstream 1188401 18006168 ~ 18015860 (-) True G62961
TU78822 other upstream 1219275 18037042 ~ 18039960 (-) False G62961
TU79413 other upstream 4494435 21312202 ~ 21312605 (-) True G63464

Expression Profile