RNA id: TU78418


Basic Information

Item Value
RNA id TU78418
length 584
lncRNA type sense_over
GC content 0.51
exon number 3
gene id AMCG00020346
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16794996 ~ 16817767 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTGCGTTTTCGCTTTGCACCCGGTTTCGCCCTGTGAGAGTCGCTATAAATACACAGCAGCGCGGCTGCAGAGTACACACTTCACCCGCACACGActgcatcaaaataaaataaaagaagggaagaaaaaatgGATCCAAAATCCTGCGCATGCTCAAAGACCGGGTCTTGTGACTGCGGGGAGAGCTGCAAGTGCGTGGACTGCAAATGCCAGGGCTGCTGCAAGAAGAAGAgctgctgctcctgctgctcgGCCGGCTGCAGTAAGTGCGCGTCCGGCTGCGTGTGCAAGGGGCAGACCTGCGACACCAGCTGCTGCAAGTGAGGACCAGCGCCCACCCTGACGGACCCCCGCCTCCACACGGATCTCTGCAACTgagcttttttgtaaaatacactgaagtgcatgttatttttcttgcctCTAATTAAATAAACGCTTTAATGTAGCGGATACTTGGTCTGTTTTGTGTATACATTATACGTGCCCCCCTCTCCAGCATTCTCATCAACATGATtgcttttaattgaaatgcGTGCATGTGTGACCTCTGCAAGGTTACTATTCATGTGTTGACTGGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78350 lncRNA downstream 133690 16679856 ~ 16680624 (-) True G62582
TU78347 lncRNA downstream 144803 16668897 ~ 16669511 (-) True G62580
TU78319 lncRNA downstream 196735 16616394 ~ 16617579 (-) False AMCG00020336
TU78317 lncRNA downstream 196893 16616323 ~ 16617421 (-) False AMCG00020336
TU78318 lncRNA downstream 196893 16616394 ~ 16617421 (-) False AMCG00020336
TU78435 lncRNA upstream 81498 16896870 ~ 16923733 (-) True G62655
TU78440 lncRNA upstream 171947 16987319 ~ 16989284 (-) True G62659
TU78445 lncRNA upstream 174895 16990267 ~ 16990714 (-) True G62660
TU78464 lncRNA upstream 203418 17018790 ~ 17019552 (-) True G62675
TU78515 lncRNA upstream 304782 17120154 ~ 17175835 (-) False G62715
AMCG00020347 mRNA downstream 23032 16779003 ~ 16791282 (-) True AMCG00020347
AMCG00020348 mRNA downstream 35692 16770322 ~ 16778622 (-) True AMCG00020348
AMCG00020345 mRNA downstream 45354 16762077 ~ 16768960 (-) True AMCG00020345
AMCG00020339 mRNA downstream 56945 16726578 ~ 16757369 (-) True AMCG00020339
AMCG00020340 mRNA downstream 100107 16683884 ~ 16714207 (-) True AMCG00020340
AMCG00020342 mRNA upstream 13579 16828951 ~ 16841510 (-) True AMCG00020342
AMCG00020344 mRNA upstream 33508 16848880 ~ 16849657 (-) True AMCG00020344
AMCG00020343 mRNA upstream 51860 16867232 ~ 16870178 (-) True AMCG00020343
AMCG00020357 mRNA upstream 179513 16994885 ~ 17000013 (-) True AMCG00020357
AMCG00020356 mRNA upstream 206480 17021852 ~ 17026667 (-) True AMCG00020356
TU78391 other downstream 21147 16792866 ~ 16793167 (-) True G62618
TU78161 other downstream 538741 16272451 ~ 16275573 (-) True G62421
TU78153 other downstream 559195 16252788 ~ 16255119 (-) True G62415
TU78145 other downstream 694161 16118989 ~ 16120153 (-) True G62409
TU78130 other downstream 711575 16098900 ~ 16102739 (-) False AMCG00020316
TU78680 other upstream 795292 17610664 ~ 17626189 (-) True G62853
TU78823 other upstream 1179172 17994544 ~ 17997017 (-) False AMCG00020403
TU78814 other upstream 1190796 18006168 ~ 18015860 (-) True G62961
TU78822 other upstream 1221670 18037042 ~ 18039960 (-) False G62961
TU79413 other upstream 4496830 21312202 ~ 21312605 (-) True G63464

Expression Profile