Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00020355 |
| length | 1377 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 7 |
| gene id | AMCG00020355 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030127.1 |
| NCBI id | CM030127.1 |
| chromosome length | 42978078 |
| location | 17028087 ~ 17032112 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0006378 | mRNA polyadenylation | biological_process |
| GO:0016567 | protein ubiquitination | biological_process |
| GO:0042382 | paraspeckles | cellular_component |
| GO:0005849 | mRNA cleavage factor complex | cellular_component |
| GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
| GO:0017091 | AU-rich element binding | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0003729 | mRNA binding | molecular_function |
| id | description |
|---|---|
| K14397 | NUDT21, CPSF5, CFIM25; cleavage and polyadenylation specificity factor subunit 5 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU78464 | lncRNA | downstream | 8535 | 17018790 ~ 17019552 (-) | True | G62675 |
| TU78445 | lncRNA | downstream | 37373 | 16990267 ~ 16990714 (-) | True | G62660 |
| TU78440 | lncRNA | downstream | 38803 | 16987319 ~ 16989284 (-) | True | G62659 |
| TU78435 | lncRNA | downstream | 104354 | 16896870 ~ 16923733 (-) | True | G62655 |
| TU78418 | lncRNA | downstream | 212715 | 16814314 ~ 16815372 (-) | False | AMCG00020346 |
| TU78515 | lncRNA | upstream | 88042 | 17120154 ~ 17175835 (-) | False | G62715 |
| TU78513 | lncRNA | upstream | 140457 | 17172569 ~ 17175835 (-) | True | G62715 |
| TU78578 | lncRNA | upstream | 332711 | 17364823 ~ 17370446 (-) | True | G62770 |
| TU78718 | lncRNA | upstream | 816046 | 17848158 ~ 17851113 (-) | True | G62880 |
| TU78802 | lncRNA | upstream | 936121 | 17968233 ~ 17969691 (-) | True | G62951 |
| AMCG00020356 | mRNA | downstream | 1420 | 17021852 ~ 17026667 (-) | True | AMCG00020356 |
| AMCG00020357 | mRNA | downstream | 28074 | 16994885 ~ 17000013 (-) | True | AMCG00020357 |
| AMCG00020343 | mRNA | downstream | 157909 | 16867232 ~ 16870178 (-) | True | AMCG00020343 |
| AMCG00020344 | mRNA | downstream | 178430 | 16848880 ~ 16849657 (-) | True | AMCG00020344 |
| AMCG00020342 | mRNA | downstream | 186577 | 16828951 ~ 16841510 (-) | True | AMCG00020342 |
| AMCG00020354 | mRNA | upstream | 17238 | 17049350 ~ 17057242 (-) | True | AMCG00020354 |
| AMCG00020359 | mRNA | upstream | 40677 | 17072789 ~ 17074242 (-) | True | AMCG00020359 |
| AMCG00020363 | mRNA | upstream | 106550 | 17138662 ~ 17139769 (-) | True | AMCG00020363 |
| AMCG00020367 | mRNA | upstream | 284985 | 17317097 ~ 17325531 (-) | True | AMCG00020367 |
| AMCG00020372 | mRNA | upstream | 360445 | 17392557 ~ 17402108 (-) | True | AMCG00020372 |
| TU78391 | other | downstream | 234920 | 16792866 ~ 16793167 (-) | True | G62618 |
| TU78161 | other | downstream | 752514 | 16272451 ~ 16275573 (-) | True | G62421 |
| TU78153 | other | downstream | 772968 | 16252788 ~ 16255119 (-) | True | G62415 |
| TU78145 | other | downstream | 907934 | 16118989 ~ 16120153 (-) | True | G62409 |
| TU78131 | other | downstream | 925348 | 16098900 ~ 16102739 (-) | True | AMCG00020316 |
| TU78680 | other | upstream | 578552 | 17610664 ~ 17626189 (-) | True | G62853 |
| TU78823 | other | upstream | 962432 | 17994544 ~ 17997017 (-) | False | AMCG00020403 |
| TU78814 | other | upstream | 974056 | 18006168 ~ 18015860 (-) | True | G62961 |
| TU78822 | other | upstream | 1004930 | 18037042 ~ 18039960 (-) | False | G62961 |
| TU79413 | other | upstream | 4280090 | 21312202 ~ 21312605 (-) | True | G63464 |
