RNA id: AMCG00020359



Basic Information


Item Value
RNA id AMCG00020359
length 888
RNA type mRNA
GC content 0.63
exon number 3
gene id AMCG00020359
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17072789 ~ 17074242 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCTGGCAGAACCTCTGAACGCAGAAAGTCGGTGCTCCCTGACGGGAGGTGGTCACTGGTAGGAGGACGCTTGTCGTCTCTTCGGCAGGCTGTGCTCCAGTGGTACAGCGTGCTGGAGAATAAAAGCGCGATCCGCCGTCTGACTCCAAgcaatGTGCTGGCCAAGGCTCTGTACGACAACGTGGCTGAGTCGCCGGACGAGCTGTCCTTCCGCAAGGGCGACATCATGACGGTGCTGGAGCGCGACACGCAGGGGCTGGACGGCTGGTGGCTGTGTTCGCTGCACGGCCGGCAAGGCATCGTCCCTGGCAACCGCCTCAAGATCCTGGTGGGCATGTATGACAAGAAGCAGCCAGGGGGCGGAGGCGGGTTGCAGGGTGGGGGGCAGACGCCCGCCTTGCAGACCCAGCTGGCCCTCCAACAACAGAACGCCTACAGCAAGCCCCCACCCTCCTCGCAGTATACCGCCATGCACCCTGCCTTCCCCAGCCAGACCGACAGCATCTACATGCTGCCCCCCAACCATGGCAAGACATCCCAGAGCCTGTACCAGGTGCCTACTGGGCCCCAGTTCGCCCCCGGCCCAGGCAGCAAAGCCCCTGCGCTGCTCCAGAAGCAGGGCAGCCAGACACAGCCACAGTTCCAGAGCCCCGCTCAGGATATCTACCAAGTGCCCCCCGGGTCCAAGAGCTCTCCTCAGGACATTTACCAGGTGCCCCCTTCTATGAACCAAACTCAGGACATCTACCAGATCCCCCCCTCCCTGGAGAAGAGGAGCTGGGACTCCCCCAAACCTCCGGGAAAGGGCTGTGCACCTCCGGCTCTGTCTCCAGGGTTTCCTACTCAACCCCCACCTGACACGGGACAGGCCTGTCTGACCAGCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU78464 lncRNA downstream 53237 17018790 ~ 17019552 (-) True G62675
TU78445 lncRNA downstream 82075 16990267 ~ 16990714 (-) True G62660
TU78440 lncRNA downstream 83505 16987319 ~ 16989284 (-) True G62659
TU78435 lncRNA downstream 149056 16896870 ~ 16923733 (-) True G62655
TU78418 lncRNA downstream 257417 16814314 ~ 16815372 (-) False AMCG00020346
TU78515 lncRNA upstream 45912 17120154 ~ 17175835 (-) False G62715
TU78513 lncRNA upstream 98327 17172569 ~ 17175835 (-) True G62715
TU78578 lncRNA upstream 290581 17364823 ~ 17370446 (-) True G62770
TU78718 lncRNA upstream 773916 17848158 ~ 17851113 (-) True G62880
TU78802 lncRNA upstream 893991 17968233 ~ 17969691 (-) True G62951
AMCG00020354 mRNA downstream 15547 17049350 ~ 17057242 (-) True AMCG00020354
AMCG00020355 mRNA downstream 40677 17028087 ~ 17032112 (-) True AMCG00020355
AMCG00020356 mRNA downstream 46122 17021852 ~ 17026667 (-) True AMCG00020356
AMCG00020357 mRNA downstream 72776 16994885 ~ 17000013 (-) True AMCG00020357
AMCG00020343 mRNA downstream 202611 16867232 ~ 16870178 (-) True AMCG00020343
AMCG00020363 mRNA upstream 64420 17138662 ~ 17139769 (-) True AMCG00020363
AMCG00020367 mRNA upstream 242855 17317097 ~ 17325531 (-) True AMCG00020367
AMCG00020372 mRNA upstream 318315 17392557 ~ 17402108 (-) True AMCG00020372
AMCG00020374 mRNA upstream 334312 17408554 ~ 17415648 (-) True AMCG00020374
AMCG00020375 mRNA upstream 351069 17425311 ~ 17432646 (-) True AMCG00020375
TU78391 other downstream 279622 16792866 ~ 16793167 (-) True G62618
TU78161 other downstream 797216 16272451 ~ 16275573 (-) True G62421
TU78153 other downstream 817670 16252788 ~ 16255119 (-) True G62415
TU78145 other downstream 952636 16118989 ~ 16120153 (-) True G62409
TU78131 other downstream 970050 16098900 ~ 16102739 (-) True AMCG00020316
TU78680 other upstream 536422 17610664 ~ 17626189 (-) True G62853
TU78823 other upstream 920302 17994544 ~ 17997017 (-) False AMCG00020403
TU78814 other upstream 931926 18006168 ~ 18015860 (-) True G62961
TU78822 other upstream 962800 18037042 ~ 18039960 (-) False G62961
TU79413 other upstream 4237960 21312202 ~ 21312605 (-) True G63464

Expression Profile