RNA id: AMCG00020366


Basic Information

Item Value
RNA id AMCG00020366
length 4539
RNA type mRNA
GC content 0.60
exon number 39
gene id AMCG00020366
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17276550 ~ 17316918 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAATCCGGAAGCTCCTGTGACTCCCAGGTGCTGGAGTTGTGCGCTATTCCAGTCAGCCCAACCCCGCCCCCTGCTCTCCAGGCCTCTAGCAGTGTGATGACGTTGTGGCGAGGGTACGTGTTCCACAGCAGACAGCCCATCAAGGTGGAGAGCTCCTTCAGCTATTTGGAGATTTATGCCATCAACATTGCAAGCCTCAACCAGAAACAGGGGCACTTTGTAGGCATAGGGGCCGGAGCTCAGAGGCTTAAGCCCCGCCCAGCTGCCTTCTTTGCCTTTGAGTGGGTCAAATTGGGCAGAAAAGACAGTGTGTTTAAGgccGTGATAGAGACTGACAGACAGCGCTACACTCTCAGTCTGATGTCTCTGGGGGACCTGGAGCTGGTGGTCAGTCATGTCACAGCGTCACTCAAGAAGATCTTCCCAGACTCTTCCCCGGGGAAGCTGCTGAAGAAGACCCCCACTGAGCTGCACGAGCGATTTAAGCGGTTGACCACTGCTGTTGAAGAGCGCATGAATGGCAGCCAGAGGCCATGTGGTCAGTACAGGCTGTTCCCTAACCTGGACGGCCCTGAGAAGAACAGGGCCAGGAATAATAAGGCACTGTGCATTACGATAgatGTGGACAATATCTATCACATTCAGAACTGCCGGGAGTTCAACCTGCTGGACTTCAGCCACTTGGACAGCAGAGATGTGGCACTGGCGGTGGCGGCTCTGTCCTTCAACCAGTGGTTCACAAGGATCTACAGCAAAGACTTCAGGCTGagCCCTGAGGTGCTGGAGCAGGTTCTCTACATGATCAACAGAGACTTTGCGGTGAAGATGGCCGGTGCCCTCAGAGACCACTCCTGTTCTGCCCTGCACACCGTCAATCTGTCCAACAATCAGATCGAAGACAAAGGGGTGGTCGCGCTCAGCCAGCAGCTAGAGCAACTGCCCAGCGGTCTGACCCAGCTGTCCCTCTCCAGAGTCTCCCTCTCACCCAAAGGTGTGGGCAGCCTGTCACAGGCCTTCCTGGTGAACCAGTCCTTCTCCAGCTCCCTGCGGCACCTGGACCTGTCGGGCAACCCTGGCATCTTGGCCACTGAGGAGGCCACACAACTGTTTAACTTCCTGTCCTGCGTCAATGCTTTGTCTCACATGGACCTCAGCGGGACAGATTGCCCATTGGACACAcTGTTTGTCTCGCTCTCAGCTGGGTGCTGCTCCAAGCTTGCCTACCTCAACCTGTCCAGAAACATCTTCTCACACAGGAAGGTGAAGGAAATAACGCGAAGTGTGAAGGACTTCTTCAGTAACTGTGCGGTGCTCGGATACGTCGGGCTGTCAGCCACCAAGCTGCCTGCAGAGGCCCTGCGGTTACTGCTGCAAGGTCTGGCTACCAACACACGTCTTTCTGGACTGGAGCTGGACCTGAGCAACTGTGAGCTCAGGTCTGCAGGTGCCCAGGTTATTCAGGAGCACATCTTCGAAGCCAAGGCCATCGGGAGCCTGAACCTATCTGATAACGGTAATCACCTGGGAGAGCTGCTCCCGTCTGGGCTCTTCCTGTCCGCCCTGCTGCCCTGCTGGGAAAGGCTCTTGTCGGGAGAGCTGAGGCGCTTCGACAGTGACATGGTAACCCTGGTGCTTTCCATCGGCCGCAGCCACACCATCCGCCGCCTCGCTCTGGGCAAGAACTTCGCCATGAAGTCCAGGGCACTTGCCGACGTGCTGCAAAGGATCGTGCAGCTGATCCAGGAGGAGGAGTGTCCCCTGGAGTCCCTGTCCGTGGCTGATTCCAAGCTAAAGACCGGCACCACCGTGCTGATCAATGCCCTGGGCAACAACACCAGCCTGACCACCATCGACATCAGTGGCAACTGCATCGGTGACACGGGTGCCAAGATGCTGGCCAAAGCCCTACAGATCAACACCAAGCTCAGAACACTCATCTGGGACAAGAACAACGTCACGGCCAGCGGGTTCTTGGACGTGGCCAACGCGCTGGAGAAGAACTACAACCTGCAGTGCATGGCCATCCCCATGAGCGACGTGGCCCAGGCGTACCGCAGCAGCCCCGAGAGGACAGAGGAGGCCCTGCAGAAGATACAAGCCTGCCTGCTCAGAAACAGCCAGCGCCAGGCCTTCGTCTCAGATCAGGCATTCCGGCTGAAGCAGGGCCTCATCACCAGCACATCAGAGCAGctGGTACAGCGCCTGTGTCTGAAGGTCCAGGATACCGTGAGGCCGTTGACCACCTGCAGTGTCCATGAAGTGCAGAACGACATCTTGTGTGCAGAGGAAGTGCTACGTGATGCCAAGGCATCCGTTGGTCTGCTGCCAACACTGTACGAACTGGGGAGAGCGCCCTCTAGTGCTGACACCCTGCATGACCTGCTGAGCAACACCGCCAAGGCCATCACTGAGGAGATCACTGAGGAGATCCAGGACCTGGTCCAGTCCATGCTGTCGGCGGCGCAGAGCGTGTGTCCCCGGGTCACTCAGAGACCCAGTGTCCGCGAGCAGCTGGCCACCTGTGTTTCCCGCAAGTCCAGGCAGGCGACCAGCTTCGTCCAGGAGACCCTGATGCAGCAGGCAGGGACCCACATCAAGAACAAGCTCAGTGAACTCAAACTGTCCATAAGTGTCAGTCTGGCTGAGAGCATCATTGACGAGATTCTACAGGACTTGTCCACGTCTCAGCAGAAACTGGACCAGCATGTGAGCGAACACACATCACCCCCCCCTTCCACCAGTGACAAGGCGGCCCCCCGGACCAACATCCCCCAGCTGCGTGTGGTGGAGATGGAGTTCCCCACAGATGAGTACGTTCCCGTGATCTGGCGCAACAGCATCCATTCCCGGAGCATCCGTCCCGCCCCGTCTGTGAAAAAGCCTGCATCTCCTCAGCCCCCTATGGACCTGCCCATTGAAGGACAGAGACTGAAGCATTACACCCGCGCTAGGCCCAGACCAAACCGCAAGAACAAGCAACCGCCCAGCAAGCCGCAGGTGCAGGCAAATGAGAGTGAGAATGAAGGGATCGAGACCATGGGGAAAGTGGACGAGGGAGTAGAGGAGTTCTTCACCAAGAAGATCCTCCCAGACGACCCCACGAGAAGCCAGCCACCAGTGAAAGCACAACCTGTGGAGCCTACCTGCTCTGCACCCACCTCTGGCTCCAAGACCATCAAGAAGAAATTTGGGGATTTCTTTGCGTTCAAGAAGGTGAGGTCGGCACGGGGGGCTAAGGGCGAGGGGGGGCCCGAGGGCAGCCCGTCGGCAGGGGGGTTGCGGCTCAAAAAGACTTCCATCGCGGACCTGATCAGGCCGCTGCGTGAGGCGGCAAAGGCGGccgagagggagaaggagagggccGAGGACGGTGCCGCCAAGGGAGGGCCAGCCACAGCCCCCACTCCTGCTCCCCCCGCACACACACCAGCCGGGCCCCCGCCCTCTGCCATTGACCGTGAGAAGAGCCGGACACTGGACAATGACCGTGAGAAGAGCCGCACGCCCGATGCAGAGAGGAAGCTGAAGCCATCACGCCGCTCGCTCCGAGAGGGCAAATCCCAGTCGCTCATCCTGCTGCCCGGAGTGGACCCGGAGGAGCCCCTTCCCACAGCCCATGGCAAGAAGCATGCCTCCGAGggtccctcctcctccttcgaGCACAGGGTCCACGTCATGCTGCACCGCATCGGCGTCACTAAGGTGCCCCCCTACGACTCCAAGAAGAGCCAGaGCAAAGAGGGAGAACTGAGAAAGGCAGACTCTGAAGgGACCATCATGGACAGCAAACCAGAGCCACCCCCACACTTCATGAAGCCTCGTACCATGTCAACCTCCTCAGACATGAGGCGCCCGCTGCGTCCAGGGCTGGCCGTGGAGTCCCTGAGAGCTGCAGGGGAGTCGTCAGATAGGCCGTCCCCAGAGCGTCCCAGCCCCGCCACCCCCCGCCTCCTGATGCGGCCCCCCATACCAGCACCCGGGGAGAGTGGCTCCGAGGGCCCCAGGACGTCCCCCGGAGCCGCCAGCCAGCACAGCGCCTCCCCCACTGAGCCACAAACCCCGTCGCCCCGCTGCTTCCGAGAgatccccaccccctccccccgccGAGGGGCCAGCCTGGGGGAGCAGCTGGACAGGATGGAGCGCCCCCTCCATGCTGCTCCTGAAGACAGTGTGCCGAGGCCGCGGCCACGCCTGAAGCCCTCCCCGCAGCGCAGGGCAGTGTCTGTGCATGAGGAGCAGCTCAGGGAGCTGAGCACCCGGCTGGAGCCTGAGGAGCTGAGGGCGACACTCCCCCGACTTCAGAGATCGCCGGTGGGAAAACGGGCTAAACGAATAGAGCTGGAGCCCTGCACGGAGGACCAGCCTGAGGGGGAGGATGGTGACAGACAGAGTGAGGAGACAGACAGCAGACCGGCCACAGAGAAGAGGTCAGGGCCCAGGCCGCACATGGAGGGACACAGGGAAGAGCAGCTGGAGCCGCTGCCTGCGCAGAGAGCACCTTCAGACCAAAGAACTGAGCCCCCCTCCCACTGA

Function

GO: NA

KEGG:

id description
K20493 LRRC16, CARMIL; leucine-rich repeat-containing protein 16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78471 lncRNA upstream 230400 17030193 ~ 17046150 (+) True G62681
TU78470 lncRNA upstream 241052 17031817 ~ 17035498 (+) True G62680
TU78429 lncRNA upstream 286971 16987319 ~ 16989579 (+) True G62654
TU78390 lncRNA upstream 482670 16793664 ~ 16793880 (+) True G62617
TU78329 lncRNA upstream 630289 16644938 ~ 16646261 (+) True G62564
TU78590 lncRNA downstream 87467 17404385 ~ 17503263 (+) True G62781
TU78603 lncRNA downstream 116724 17433642 ~ 17434200 (+) False AMCG00020370
TU78749 lncRNA downstream 637405 17954323 ~ 17955274 (+) True G62909
TU78758 lncRNA downstream 664115 17981033 ~ 17983521 (+) True G62912
TU78763 lncRNA downstream 670930 17987848 ~ 18032139 (+) True G62916
AMCG00020364 mRNA upstream 5018 17261682 ~ 17271532 (+) True AMCG00020364
AMCG00020365 mRNA upstream 17593 17237808 ~ 17258957 (+) True AMCG00020365
AMCG00020361 mRNA upstream 87299 17180941 ~ 17189251 (+) True AMCG00020361
AMCG00020362 mRNA upstream 97524 17176514 ~ 17179026 (+) True AMCG00020362
AMCG00020360 mRNA upstream 101842 17169991 ~ 17174708 (+) True AMCG00020360
AMCG00020369 mRNA downstream 22838 17339756 ~ 17340976 (+) True AMCG00020369
AMCG00020368 mRNA downstream 47540 17364458 ~ 17365614 (+) True AMCG00020368
AMCG00020377 mRNA downstream 68238 17385156 ~ 17385546 (+) True AMCG00020377
AMCG00020370 mRNA downstream 116747 17433665 ~ 17442711 (+) True AMCG00020370
AMCG00020376 mRNA downstream 136010 17452928 ~ 17453764 (+) True AMCG00020376
TU78405 other upstream 460693 16814374 ~ 16815857 (+) True G62632
TU77751 other upstream 2807250 14467800 ~ 14469300 (+) True AMCG00020281
TU77582 other upstream 3325503 13948426 ~ 13951047 (+) True AMCG00020267
TU77503 other upstream 3409987 13863477 ~ 13866563 (+) True AMCG00020255
TU77491 other upstream 3441718 13833170 ~ 13834832 (+) True G61894
TU78611 other downstream 142242 17459160 ~ 17471869 (+) True AMCG00020371
TU78735 other downstream 611410 17928328 ~ 17928904 (+) True G62895
TU78775 other downstream 741640 18058558 ~ 18061864 (+) True AMCG00020408
TU78779 other downstream 750869 18067787 ~ 18072043 (+) True AMCG00020407
TU78921 other downstream 1015651 18332569 ~ 18334032 (+) True G63045

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00025530 True 5241 mRNA 0.52 40 NC_007129.7 22302635 ~ 22396371 (+)
grasscarp (Ctenopharyngodon idella) TU90541 True 370 lncRNA 0.67 1 CI01000013 2883529 ~ 2883898 (+)
rainbow trout (Oncorhynchus mykiss) LOC110532142 True 3623 mRNA 0.56 27 NC_048565.1 28038922 ~ 28090334 (-)
eurasian perch (Perca fluviatilis) TU90541 True 245 lncRNA 0.48 1 NC_053117.1 38244302 ~ 38244546 (+)