RNA id: AMCG00020367


Basic Information

Item Value
RNA id AMCG00020367
length 3143
RNA type mRNA
GC content 0.54
exon number 14
gene id AMCG00020367
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17317097 ~ 17325531 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttcttttgtattttatataataaattaaactttacaCTGAGGCTGCTTAACGTaatgatgcatttttaatgttttattttctctaagaCTCAATTGTCAATTGTTGTGAAGTTGACTGGAACCAAAAACCCAGGAGCCGTTGCGTCCGCGGGGGAAGAGGGATGTGTGATGGACTGAAGCGGGAGATAGGAAATAGCaggttttaaaatactTCCAGGCCCCGCAGGGAGAGAATAAGGAGTCCCTGGTGAGGACCAGAATGGCAGCATGGCAGTGAAGAGGCGGACGGGCATCCAGCCCTGGATCGAGAGCCTGCTGGACCAGTACAGCCAAGCGCAGGAGCTGACGGTCTCTGTCAAGGCCCACGTCATTGGGTTTGGGAACCTGTCAGGGCTGCACAATGGACAGGTGGACAACCCCGCCGCCGTCGTCTTCCTCTCCGACCACAAGGTCTACATCCCAGGCATCATCACCACCAGCGCCtgggaggagctggagcaAGAGGAAGACTGTTGTTCTTTTACAGACCTCAAGGACTATATTGTAATCCTGGTCAAATACAGCATCATGTTCCAGTTGGAAAAAGAAGAGAGTAAATCTCAGTTCTTTCTGGTGATCACGAAACTGCGCACTCTGAGGTTAGAGCCAGTGTTGCAGGACGTACCCAACTGGTCAagtctggaggaggaggacagcaTGATGAGTCACAACAACTCAGCGTACTGCCTGACACAGCTGCTGGGTCTCCTGGACCAGGAGAAGGTCAGGAACCTGAATAACACAGTGAGGGAGTGTCTGGATGCCGGCGCCCTCCACCCACAGCCCTCCACATCCCACGCGCCCCCACCGCCAGCCAACACCCCCCTCAAAGGCTGGAGTCGTGACAGGATCCTGAACAAGgGAAAGACACCTTTCACTGTCCCCGTCTCCCACCTCATCATCCCTGCCCAGCAGAGGGAGCTTCTCACCACAGGCCCAGCACTGTGGGAGGACAGCGGACCAGCGCAGAGCCCCACCTCAGGGACGGCCGGGGTGAGACAGCAAGTCATTGAGATCGGTAGCTCAGTGGAGTCTGAGCAGCAGCTGGAAGAGGATGCAGACCTGCCTGACCCCGGACAGGACACCACTAGTGgatCTTTAACTCCTGACACCCTCCCAGAGCCACAGAGTCCTCTGTTACTCCCACAGTGCAGAGTGGGTCCCTCCTCCGCCCCCTGCTCTGCCAGCTCTGTCCCAGAGGCCACAGGGCAGCACCCTTGCACCCAGCAGCCTCCCGGGGAGGACTCCCTCCGGCCATCCAGGACACCCATACTGTTCCGACAAATCTGCCTCTCCCACAGAGGACCGGAGAAGGAAGCGGAGGTGCTGGATGTCACCCCGCAGCAGCTGAGCCAGGTGTCTCCAGACAGCAGCCTCCCCGCGTACCAGAAACCACGACCTTCCCGCCCCTTGCCCTTAaccctctcccccctctccccgGCCCGGGTGACTGCTGGCACGGGCACCGAGTCCTGCCAAGGCTCCAGAGCTGTCCAGCCGCTGTCGCTCCCCAGTCACCCCTGTGCCGCGGAGGCCCCCAGACGCACACCCCTGGCTTTCCTCACGCTGGGGCCGCTGGGCGGGctggaggagaggaaggagaatGTTCTCCAGAGGAAAGCAGGTAACACCAAGAGGAAGCAGAGGGAGCCGGTCGTGAGCCTCCATGAGGAGCCTGTCGTGGATGCGGGGGCCCAGCCTCGTCCCCAGGCTGTCGCCAGCTCCCCCAAGAGGAGCACTCAGGCCAGCAGCCTGACACAGTCCATACTGCCCCTGCAAAGCCAGGGGCCAAACCACAGGGCCGACAGCGATGGTGTGTCCAGAAGGCCTCACAAACATGCAGCCAGACAGTGCCCCCAGCCTGCCAACACGCATGCTGATGGAGCTACATTCATGTATAGCTACAAGCCCTCAGGCAGTGTGATGCAGGCCGTGAGCTCTCTTAGGGTTTCGGAGGAGCTGCTGCGGTGGTCTGTGCGGTACCTCATCAACCCAGGCGGCTCTGAAGACCGTGGCTGAGCCCGGGGAGGTGTCGGCCCAGTGGAGTATCACCAGCATTGGCAGGTTGGCTTGGTCTCCGTGGAGTGCACACCAGGCAGCTCGAGGACAGCTTTTATTCTTGCGTGTGGATCGAGGTCCAGCTGCATCCCGCAGACCACAGgtctggagcagcagcagctgttgATGCACATCCCAGTCTCAGTAAGGTACTTtggataaaagaaaaacaagaacaccaCTGCCCCCTTGTACTTCTGTAATTGACCGACATGAGAAGGGTGGCATTGCAGTTATTCATGTTCGgaggttttaaatattttcacataAAGACAGATAACTTATAGCTTAGAATAACTTAGGATGTTCTGACtttgacagttttgtttttttgattataTGTTactgtttacattaaaacacctcgataaagacatttcagtttctgGTGTTCTGGATCTCGTTTCCATTAACTTCAGAATCTCCTTTGATGCAGTCGGCGTGACGTATTTCACCTGGACTTGTTTTCCCTCAAGTCGCGGCATTCCAGGTGTCTCTGTGCGTGAACTGTATGAAGGCATTTCTGTGATCCACAACTGAATGCCAGCCTCCATGATGTTGAGTTGCGTCAGTTGATGTTAATTGTGGAACCCCTGGATATACCTCGTGAATTGGTACAGCACTCTTGCCAGAAGAGTCTTTCTACAATTGTTCTGTGACGCTGAgtgggtgtgggggggaaatGTGGAAGCAAATgttgatcttttttttattttttaagtgtgtatatatagcatgCGTAGTGTGTTCTCTTATTATTGTAAGTGTGTCACATATACACTGTTGTTTCACTGATGATCCAGCCGAGGTAGACGGGGGTTGGCGCTGCATGGCCATCTTTTCCCCCATCTCTTCTTTGTTGCTTGTTGTCTTGCCAGTCTACTCCCCACCCCATCCACAGGCTCCTCCCCAAGCCTGTGGGGACCCTGGATGCCAGCAGGGGTAGGCAGATGTGTTCGAGAGACGCACAGCAACAATATCCGAGCCCACCCTGTTTAACGggatctttttgtttttttaagactaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03030 DNA replication
ko03440 Homologous recombination
ko04110 Cell cycle
ko04111 Cell cycle - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78515 lncRNA downstream 141262 17120154 ~ 17175835 (-) False G62715
TU78513 lncRNA downstream 141262 17172569 ~ 17175835 (-) True G62715
TU78464 lncRNA downstream 297545 17018790 ~ 17019552 (-) True G62675
TU78445 lncRNA downstream 326383 16990267 ~ 16990714 (-) True G62660
TU78440 lncRNA downstream 327813 16987319 ~ 16989284 (-) True G62659
TU78578 lncRNA upstream 39292 17364823 ~ 17370446 (-) True G62770
TU78718 lncRNA upstream 522627 17848158 ~ 17851113 (-) True G62880
TU78802 lncRNA upstream 642702 17968233 ~ 17969691 (-) True G62951
TU78844 lncRNA upstream 811949 18137480 ~ 18138298 (-) True G62981
TU78888 lncRNA upstream 858477 18184008 ~ 18186050 (-) True G63015
AMCG00020363 mRNA downstream 177328 17138662 ~ 17139769 (-) True AMCG00020363
AMCG00020359 mRNA downstream 242855 17072789 ~ 17074242 (-) True AMCG00020359
AMCG00020354 mRNA downstream 259855 17049350 ~ 17057242 (-) True AMCG00020354
AMCG00020355 mRNA downstream 284985 17028087 ~ 17032112 (-) True AMCG00020355
AMCG00020356 mRNA downstream 290430 17021852 ~ 17026667 (-) True AMCG00020356
AMCG00020372 mRNA upstream 67026 17392557 ~ 17402108 (-) True AMCG00020372
AMCG00020374 mRNA upstream 83023 17408554 ~ 17415648 (-) True AMCG00020374
AMCG00020375 mRNA upstream 99780 17425311 ~ 17432646 (-) True AMCG00020375
AMCG00020373 mRNA upstream 117954 17443485 ~ 17451798 (-) True AMCG00020373
AMCG00020382 mRNA upstream 224220 17549751 ~ 17559095 (-) True AMCG00020382
TU78391 other downstream 523930 16792866 ~ 16793167 (-) True G62618
TU78161 other downstream 1041524 16272451 ~ 16275573 (-) True G62421
TU78153 other downstream 1061978 16252788 ~ 16255119 (-) True G62415
TU78145 other downstream 1196944 16118989 ~ 16120153 (-) True G62409
TU78131 other downstream 1214358 16098900 ~ 16102739 (-) True AMCG00020316
TU78680 other upstream 285133 17610664 ~ 17626189 (-) True G62853
TU78823 other upstream 669013 17994544 ~ 17997017 (-) False AMCG00020403
TU78814 other upstream 680637 18006168 ~ 18015860 (-) True G62961
TU78822 other upstream 711511 18037042 ~ 18039960 (-) False G62961
TU79413 other upstream 3986671 21312202 ~ 21312605 (-) True G63464

Expression Profile