RNA id: AMCG00020370


Basic Information

Item Value
RNA id AMCG00020370
length 2162
RNA type mRNA
GC content 0.60
exon number 16
gene id AMCG00020370
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17433642 ~ 17442711 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCTGTGTTTACATCCATGTTGAGTTGTGTTGGTCGTGGGTTCACATTACTGACAGTATACAGAAACAGCAAGGATGTCGCTGCAAAAGGAGTGCCGaggAATGCCCTCAAGCTTTACAAGTGGAGCTGTACAGCCAGACAGCAGGAACCGGCAAGAAAAGTGCAGTGATGCCATGGGCTCCCTATCACTGAGAGGAATAAGTGGAGCTGGTGTCACGGGGCACCTGTCCACCTGGCCTGCCCACATAACCTCACACACGGTCCAGCCAGGACGCAGACACCCACTGCCACCCGAAGCCAGGATCCATGGCTGCAGGGAGGAGTCCTCGGGATCCGTCTCCAAGCCCCGTTTCTTGGAGCAGCTGGAGAATTACCTGCGGAGAGAGCTACAGACCCTGGACCCCAGCCAGCCTGACGCACAGGAGTGCAGACTGCAGGCTTACCAGGAAGTGTTTGGCTATTTCATTGAGGACTTTAAAACCTACAAGCCATTACTCGCAGCCATCAAGAACGAGTATGAAGTCACGCTAGCTCACCTGAGGGGTCAGATCCGCAGCCTGGAGCCGCTGCGGGCGATGCTGGCGACGGTGTCGGAGCAGTGTGAGCAGAGGGTACTGGCCCTGGGAAAGGAGGAGCGGGCTGAGGTCAGGGCCCTTAAGCAGGAGAGGAGCCGCCTGCTCTGGGTTATCGAGGAGATGAGGGAGAGCCAGACCGGCCTGCAGGCCCAGgtgtcTCGGCTGCAGGAGGAGCTGGCTGCGCAATACCTCCTCTATAGGGAGGAGCGTGATGCCCGTAAACTGCTTGTGGCTGACATCAGTAACATGAGATGCCTGCAGGAGGACCAGAAGAGCCCCAAGCAGGAAGTGGAGGCGGAGGAGGACGTGGTGCGGCTGCGGCTGGCTCTGCGCGTGGCGCGTGAGGACCTGACCCGGCTGCAGGTGGAGCTGAACCGCGTGCAGGCTGAGTACGGGGATGTGGTACCGCGCCGGGACTGGGAGCAACTGGACTCCACACATAGGGACGCCATGAACAAGCTGGAGGTGCTGCAGAAAGACTATGCCCAGGTGAAGCTGGAGCTGGACGCCCTGCTGGGGGTGCACAGGCCGCTTGCGCAGGAAAGGGACAGCCTGCAGGCCGAGTTACAGCGCTTCAGATCTGTGTCCACACCCCGGCCGCGCTGGGACAGGTGTCAAGatGTGATCTCTGGGGGCAGTGAGCGCTGGGCTCAGCTGTCCCAGGGGCAGTCAAGTGACCAGCTGGTGGGCATTCTTCTGGAGGAGCTGACGGGAGGGGTGTCCAGAGAGAAGGATATCTTTGATGGGCTGGGTACAGGAGAGCATGTCCCGGTGTACCTGCGCTACGATGGACAGATCAGAAACCTCAGGCTGAAGAAGGCAGATATAGTGAACACCATCAAGGAGGTCTGGAAGGAGAAAACCACAGAGGATGAGCAGAGAGAGGATAGGAGCAGCCTGGCTGAGTTTCTGCGTGGCTTCCTGGAGAAGCAGTATGGGGAGCGGGCGGCACAGTGGGCCTACAGCTTGGTGGAGGGGTGCAGGCAGCACCGCGACGATGACTTCATCAGCCTCTTCCTCAGTATCCTCACAGGAAAGgtggATGAGAGCGTGTATCACGGGCAGATTCGCCTGCTGTCGCACCTGCTGAAGGAGCTGATCCACAGCGACGCCACAGAGAGCGGCTGCCTGACCCCACCGGAGCTCAGCGAGGCCCTGAGGCGAGCGTTCCCTCTCAAGACGGAGGGGCAGATTGAGGAGCTGGTGCAGGCTGCTCAGGCCCAGCTGGAGGCCACGGGGGGCAGCATTGCCTATCAGGCCTTATTCAACGAGGATGGAGAAGGAAAACCTGGGGCCTTCATTAAGCTGGTGAGAAACCAGGCCAACGCCGAGAAGCGCAAATACCTCACGGAGCTGAGGACCCAACTGTGCGACAAAGACAAGGTCGAAGTGGCAGAACTACGGACAGCCATTCAGAGTATCGACCCCTCGATCGACCCCCAGACGCTGGACGGCTACCTGTCCTTGGCCTTCAAGACACCGACCGCTCAACTGGAGCAGACGCCCCCCCTGGACACAGACTCAGTCGTGCAGCGCCTGCTGGCTGCCGATGTGCGGAGGGTAGGACCCCCACAAGCACAGCCCTGA

Function

GO:

id name namespace
GO:0021591 ventricular system development biological_process
GO:0021592 fourth ventricle development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78471 lncRNA upstream 387515 17030193 ~ 17046150 (+) True G62681
TU78470 lncRNA upstream 398167 17031817 ~ 17035498 (+) True G62680
TU78429 lncRNA upstream 444086 16987319 ~ 16989579 (+) True G62654
TU78390 lncRNA upstream 639785 16793664 ~ 16793880 (+) True G62617
TU78329 lncRNA upstream 787404 16644938 ~ 16646261 (+) True G62564
TU78749 lncRNA downstream 511612 17954323 ~ 17955274 (+) True G62909
TU78758 lncRNA downstream 538322 17981033 ~ 17983521 (+) True G62912
TU78763 lncRNA downstream 545137 17987848 ~ 18032139 (+) True G62916
TU78838 lncRNA downstream 692282 18134993 ~ 18138267 (+) True G62975
TU78859 lncRNA downstream 754868 18197579 ~ 18200101 (+) False G62989
AMCG00020377 mRNA upstream 48119 17385156 ~ 17385546 (+) True AMCG00020377
AMCG00020368 mRNA upstream 68051 17364458 ~ 17365614 (+) True AMCG00020368
AMCG00020369 mRNA upstream 92689 17339756 ~ 17340976 (+) True AMCG00020369
AMCG00020366 mRNA upstream 116747 17276550 ~ 17316918 (+) True AMCG00020366
AMCG00020364 mRNA upstream 162133 17261682 ~ 17271532 (+) True AMCG00020364
AMCG00020376 mRNA downstream 10217 17452928 ~ 17453764 (+) True AMCG00020376
AMCG00020371 mRNA downstream 16433 17459144 ~ 17469465 (+) False AMCG00020371
AMCG00020380 mRNA downstream 30186 17472897 ~ 17500277 (+) True AMCG00020380
AMCG00020379 mRNA downstream 75116 17517827 ~ 17520204 (+) True AMCG00020379
AMCG00020378 mRNA downstream 95414 17538125 ~ 17549842 (+) True AMCG00020378
TU78405 other upstream 617808 16814374 ~ 16815857 (+) True G62632
TU77751 other upstream 2964365 14467800 ~ 14469300 (+) True AMCG00020281
TU77582 other upstream 3482618 13948426 ~ 13951047 (+) True AMCG00020267
TU77503 other upstream 3567102 13863477 ~ 13866563 (+) True AMCG00020255
TU77491 other upstream 3598833 13833170 ~ 13834832 (+) True G61894
TU78611 other downstream 16449 17459160 ~ 17471869 (+) True AMCG00020371
TU78735 other downstream 485617 17928328 ~ 17928904 (+) True G62895
TU78775 other downstream 615847 18058558 ~ 18061864 (+) True AMCG00020408
TU78779 other downstream 625076 18067787 ~ 18072043 (+) True AMCG00020407
TU78921 other downstream 889858 18332569 ~ 18334032 (+) True G63045

Expression Profile