RNA id: AMCG00020372


Basic Information

Item Value
RNA id AMCG00020372
length 3786
RNA type mRNA
GC content 0.54
exon number 3
gene id AMCG00020372
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17392557 ~ 17402108 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGTGTCCAGGTCATGCGTGCAGTGTGCGCAGACTCCCTTTGTCCTGttcgcacaaacacacagaaagacacgGAGTGGGGGAAGACATGGGCTGCGACTGAACCAGCTCGGCCTCTGCACACAGGAGGGACGTCTACTTGCAGTGCCTGCAGAGGTCCAACCAGGAACCGGCTCCGCTCCCATCGGTGCAGCggcgcagacccgcgcagatctgcggacgGCGGCGGAAACGCGAACGCGACCAGGAACTCGGACACCCGCACATCCTGCACGGGGACGCGCACCCCCAGCCCGCCAGGGGCCAGGCGCGTGCCCGTGGAGAAGACACCGAGCGGCGCGGCGTCGCTCCCCCGGGCTCTGGGGACCAGGAAGGGACACGACACCCCGACACTCCCGCTCCGGCGCGGCGGTATTTGGAGGACACAGCCgaggtcccccccccccattcccGTCTCTCAAAAGCCTGCAGGTCTGGAGCAGCAGCGTGTGAGCACCAGTATTGCTGGCCTGGCTGTGTGCTGTTGTGGgcaggtgaggaggaggaggagggtggcgGCGCAGTGAGAGGGGATGTGCGCTGGGCTGTGAGCGCAGTGCGGAGAGGGCCGACTGCGGGGCAGCCATGCTGCCGGGCGTGGGCGTGTTTGGGACTGGCAGCACGGCCCAGGTGCTGGTTGCCCTCCTGCGAGATGCGGGCTTCTCAGTGCAGGCGGTGTGGGGCCGCACGGACGAGGAGGCCCAGCAGCTGGCGCAGGAGCTTGCCATCCCCTTCTGCACCAGCCGCACGGATGACGTGCTACTACACCCTGACGTCGACCTGGTCTGCATCAACATCCCACCCCCACTCACCCGCCAGATCGCCGTCAAAGCTCTCGgGATTGGGAAGAATGTGATCTGCGAGAAGGCAGCCACATCGGTTGATGCATTCAAGATGGTGACGGCTGCCCGCTACTACCCACAGCTGATGAGCCTGATGGGCAACGTGCTGCGCTTCCTACCAGCCTTTGTGCAAATGAAGCAGCTGATCGACGAGGGCTATGTGGGCGAGGTGATGGTGTGTGACGTGCGTGTTTACTGGGGCAGCCTGCTGAGCAAGACCTACAGCTGGCTCTGCGACGAGCTGATGGGTGGCGGCGGACTGCACACCATGGGCACCTACATTGTGGACTTGCTGAGCCACCTGACCAGCCGGCGGGCGGAGAAAGTGCACGGACTGCTCAAGACCTTCGTGCGGCAGAACGGCGCCATCCGGGGCATCCGCCAGGTCACCAGCGACGACTTTTGCTTCTTCCAGATGCTGATGGAGGGTGGCGTGTGCAGCACCGTCACACTCAACTTCAACATGCCTGGCACCTTTGTGCACGAGGTGATGGTAGTCGGCTCGGCCGGGCGGCTGGTGGCTCGGGGCACGGACCTCTACGGCCAGAGGAACACGGCCTACCAGGAGGAGCTGCTGCTTTCGGACACCTCGGTGCTGTGTTCGGTCGGGGggctggagaaaggactgcgGGACATCCCACTGCTCTACCTGAAGGGCATGATGTGCATGGTACAGGCCCTGCGGCAGTCCTTCCAGGGCCAGGAGGACCGGCGGACCTGGGAGCTGAAGCCTCTGGCCATGGCCGCCTCCTTTGAGGATGGGCTGTACATGCAGAGCGTGGTTGATGCCATCAAGAGGTCCAGCCGCTCGGGTGAGTGGGAGCTGGTGGAGATCATGACCGAGGAGCCAGACGCCAACCAGAACTTGTGTGAGGCGCTGCAGAGGAACAACCTCTGAGAGGGTCCTTGTTGCCCCTCTGTTCCGCCCCCTGGCTCAGCCTCATCCATGTCGGCTTCCCTTCATTCATGGGTTGTCATTATCCTTCCCgttggctgtttttttctttctatctccTCTCCATGGCTTTGATTTGCACACAGTATGCCTCTCTTCTTCAAAGCGAGGTCTTGCTTGGTAATGTGGAATTGGCAGGGCCCGACATAAATCCCTGCAATTTAACTACTGATGACAGACAAGGACTTTGTTCACCAGAACATTCTGGACCCCCGAAGACTGAGAAGTTTATCATATCTGTTCAGATCTTTTAACATCCTGTAGGAAAGtaattctaatatttttttaaaaagcagattaTTTTTGACTGCTTAAAATGTTAAGTTTTCCCCCATTGCATCACACTTGTTTACGACTGTCCCTTGTGTGAATAGTGTTCTCAGGTTTTCAGCTTGTTAAGGAACCTTTAAAAGGTTAGTGACCTCTTATCAGGGTCACACAATGATTTTATACTTGATAATTGGAGGCCGTATTTTTGCCTTACTCCTATCTCAATGGCATTTGAGCTCACTCGCTTGCTAGGCATGCTGACGTGTCCCAGTCTCTGCCTGAGGATAATTTCTGGCTGACAGAGTACACTTGAAGTGTTGGTATGTCATACTAGTGAAAGCAAATCCTTTGCTGTAGCAGGAACGGCTTCGCAGGGCTGTGAAGAATGACCCCTGAGCCTCAGCCCCTCTGTCCTGAGCTGTTTGGCCTCCGACAGCAGAACTGGCGCACGTTATCGCTCTACAGCACTGTACTCCAATGCCGACCTGCGTATTTCCCACATCAGTGACTGTACCCTGGCAGCTGATAAGAGTATTTCAGAAGAGTTTCTCTTGTGTGAAACTGAATTGCCAGTCTTGTTTCTGCCTCTTGCagggctctctctctcaacccgCACCTAGGCCTAGCTGGCTTCAGCATGAAAGAGTCCCAAGTTAATGTGTACGTCGATGAGGTCCGGTCTCCACATAAGACTGAGAATGAGGACATTGCTTTGGCACTAGGTCGGCTCATTTGGAAGCCATCTCCTGTACAGATTATACTACTGAGTCCATTCAGCTGCTCATTCCACTGTGGCCTCCCTGCCTGCTCTCTATTGCTCCGCTATCCCTGCCTTTTGTCAGATAAATGCTAATTAAactcttaaaaaatgtaatgttaaccTGTATACAGTATAACATATGTATGAGGGACCTACTTAGGGCCCTAGGCTGCACATGCAATATACTGTCTCTGCTCCAAAGTGAGAGGCAAGCCGAGCCTCTTGCCATGTCTGAGAAGTGaaaccgtgtgtgtgtgcgtgcgtatGTGCGTGTGCATTACGGGGCTGAGCAGTTTCAGCACTTGAAATCCTACGCATATCTGAAGATCACTCAAAGAAGAATGTGCCAGGTTTTCTTTGGGTGTTTTAGCTCACTGTCTGGGAGTCACTACCCTTAATTACCTAATTCAGTTTATTAATAGACGGGATGTGGGACAACAGCAGCCAGGGACAGTCCTCTCCCGTCTAGATTTACCTTTCCCCAATAGTTGGGGATTCAATCTGTATGATCATTTCCCCCCCCTCTGTCTCCTGTTGTTGTTTGGAGATTTGACATATTACATGCtgcattgtctgtgtgtgtactggTGGTAGTGCTgaacactgtatttattttatttttttgttgttggttgtttttatacactggggtgggggggggggttcattACTATTCTAAACTAATTCAGGGTAAATTTGTTGGAAGAGAggaaccacaacaaaaaaaaaaactttctaaTCGGCTGTACATAGTTTGTAGTAggatatttattgtgtttttctgacaTGGGTTATTGCTGCAAATGTCTGGACTCTGGTGATCTCACTGTAAGATGGGAATCCGAGCCCTAATCCATACTGTCTATTTGAATgtaacaaagaaattaaataaagttctTGTagctacattttacattaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78578 lncRNA downstream 22111 17364823 ~ 17370446 (-) True G62770
TU78515 lncRNA downstream 216722 17120154 ~ 17175835 (-) False G62715
TU78513 lncRNA downstream 216722 17172569 ~ 17175835 (-) True G62715
TU78464 lncRNA downstream 373005 17018790 ~ 17019552 (-) True G62675
TU78445 lncRNA downstream 401843 16990267 ~ 16990714 (-) True G62660
TU78718 lncRNA upstream 446050 17848158 ~ 17851113 (-) True G62880
TU78802 lncRNA upstream 566125 17968233 ~ 17969691 (-) True G62951
TU78844 lncRNA upstream 735372 18137480 ~ 18138298 (-) True G62981
TU78888 lncRNA upstream 781900 18184008 ~ 18186050 (-) True G63015
TU78936 lncRNA upstream 955717 18357825 ~ 18358910 (-) True G63057
AMCG00020367 mRNA downstream 67026 17317097 ~ 17325531 (-) True AMCG00020367
AMCG00020363 mRNA downstream 252788 17138662 ~ 17139769 (-) True AMCG00020363
AMCG00020359 mRNA downstream 318315 17072789 ~ 17074242 (-) True AMCG00020359
AMCG00020354 mRNA downstream 335315 17049350 ~ 17057242 (-) True AMCG00020354
AMCG00020355 mRNA downstream 360445 17028087 ~ 17032112 (-) True AMCG00020355
AMCG00020374 mRNA upstream 6446 17408554 ~ 17415648 (-) True AMCG00020374
AMCG00020375 mRNA upstream 23203 17425311 ~ 17432646 (-) True AMCG00020375
AMCG00020373 mRNA upstream 41377 17443485 ~ 17451798 (-) True AMCG00020373
AMCG00020382 mRNA upstream 147643 17549751 ~ 17559095 (-) True AMCG00020382
AMCG00020385 mRNA upstream 257753 17659861 ~ 17673675 (-) True AMCG00020385
TU78391 other downstream 599390 16792866 ~ 16793167 (-) True G62618
TU78161 other downstream 1116984 16272451 ~ 16275573 (-) True G62421
TU78153 other downstream 1137438 16252788 ~ 16255119 (-) True G62415
TU78145 other downstream 1272404 16118989 ~ 16120153 (-) True G62409
TU78131 other downstream 1289818 16098900 ~ 16102739 (-) True AMCG00020316
TU78680 other upstream 208556 17610664 ~ 17626189 (-) True G62853
TU78823 other upstream 592436 17994544 ~ 17997017 (-) False AMCG00020403
TU78814 other upstream 604060 18006168 ~ 18015860 (-) True G62961
TU78822 other upstream 634934 18037042 ~ 18039960 (-) False G62961
TU79413 other upstream 3910094 21312202 ~ 21312605 (-) True G63464

Expression Profile