RNA id: AMCG00020373


Basic Information

Item Value
RNA id AMCG00020373
length 2930
RNA type mRNA
GC content 0.54
exon number 12
gene id AMCG00020373
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17443485 ~ 17451798 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTTAACTTCCGCTGATGAACAATCGCGAGGTTTGGCTTGAATTTGCTGGCGGGATGAGCGACACTGAAACGAAAATTCAAAACGTAGATAACTGTTAGATTGGACTCTCACTGGATACAGAACCAAATAAGAAATGAATCAACACATATgaggaatattaataattttctgTCTCAAATCGCCGAGGTGCTGATCTAACTAACAAAGACGTCTGGATTGCACTAAGGAAACAACGGTTGAGTGACCATGGACTCCCCAGAGGCTGACATCTCGACACGCACCCTGCTGAGGCAGGTGCTGCAGACAGAGCTGCCCCGCTCCCCCGTCACACGCAGTGCCCAGGCTTCCTCTCCCAGGAGCAGACGGAGTGCCAAGCTGCGGAGGAGTGCCGCCGCGGTCCCCTCCCCTCACGTAACCCTGAGGAATAAACTCAAGCAGACCCTGCGGGAGAGTGTAAGAAAGGCCCCGAATGATTCCAGCAGTAAGAGGCTGTCCACCGTGAGCAGGCAGGCGGTCAGCCCTGCAAGTCTGCCTGGCCACGACTCTCTGGATGAGGTCACACCCCGCCTGCTGCTCCGCAAGATCATTCTGACAGAGCCGGAGGTGTCTCTGCTGGTCCCAGACAGACCTGCGAGGGATGATCCTGAACTACAGCCCAGTGAGTCAAGTCCAGGCAGTAACAGACCCAGCACTGGGACCCTAGACCTCGACCTGCCAGACCTGTCCACTGTAAACCTTACCGTGGCCGTCCAGAGGATCAGCAGGAAGAGGCCGAAGAGGAGAGTCAGCGTGTCTCAGTTTGAGAGGAGGATGGAGCAGGATGGAGAAGACCTGGAAATCCAGCAATCTGGCACTGAGGACAACCTCTCCGAGCTGTCCGGGGGTGCGGCCAGCTCTTTCAGTCTGACGCTGAAGACACCTCACATGGATCTGGATTCGGGCAAGCCGGGGCTGCAGAGGAAAGCCGTGAAACGCAAAGCCATCTGCGTGGAGGACTTCGAGGAAGGTGTTCAGAATTACCTGCACAACAAGAGAAGCCCAGGTTTGGAGAAGAGCACTTCCAACCCACACAAGACTCTGAGCGAGACGGGCGCCCTGGAGACATTCACCCTGGGCTTTAGCGCGCTGACGGTCCCTGACATGACTGACAATCTGATGAGCAACACCAAGCTGTACGACCACACGAGCTTCATCCTCCAGACTCCCCATTACGCGGCCTCCCTCCCACTGGGGCCCAGGGAAGACAGCGGTACCAACCAGACCCTGGATGGAATGGGGcctgaagaggaggaggggccAGTTGCAGAGAGGAAGGTGGAGGGAAGCTGGTTGCATCCACAGACTGAGgtagagggagaggaggagaaggcaGAACAAGACCTGGAGGAGACTGGTGTGGAGACCCTAGAGGGCAGCCAGCAagtgggagaggagggagacagagaggaggcgggactggaggaggaggaagaaggagaggaggagggagaagaggTGGCAGCAGAGTCCCAGAGAAGGATGGGCgaggtggagggagagagcagaggcTTGACAGATCAGGAGAAAGAGGGTTCTGGTATTGTTGTCAATGAAGGAGACTTGGATGAAATGCCACAGGAGATGGAGGTGGCAGGAGAagctgaggaagaggaggaggagcagcagcaggctgAGCACATCGCACGCAGAGCCACCCGCTCGCAAGGTGGACTGAAGCTGAAGAGCCCTGACTCGCTGCAAGGGGGGAAAGGGGACGGCAGTGTGATAGTGGACGGAGAGCTGGCTGATGAAACCACCAGAAACTCGCCCACCCCTCTTGGCTCTCCTAGAGGAGCCTCACTGGACGAGGGGCCACCTAGTTCCTCGCCACAGCCAAACCGCTCCAGGAGGACTCTTTCTGGAGCCGACTCAGAGCAGGGAGGAGGATCAGGGGTGAtgggtgagagtgagagtgagagtgaccTCCACGCAGGAGAGGAGTGGGACAAGGAAAACTCTGCTCCCGTTCCCAAGCTGGAGGCCTCTGCGCCCCCAGGGACACCCATCCCTCACTCCACCACGGCAGTGGAGCTGGGGCTTTCAGGCCAGGATGAAGAAGAACAGCTGTCCTCCAGCGACGAAGAGGAGGATGGATCTCAGAGTGAGGGTAAGAAGTTGGCTCTGACTGCTGCAACCACGAAGCCCCCGAGGAAACCCCGAGCCGCCTCAGCCAAGAAGGAGCCTGGTCTCCCCAAGAGCTACATCATGTCAGTCTTCACGCACTTCGCCAAGACCAAGGTGTCCCGGGACATCTACCCTGTCCTGAAGGAGACTTTGGATAAGTATTTCGATCGCCTCTCAGATGACTTGGAAGCATACGCAAAACACGCCAAGAGAAAGACCATTGAAAAGGAGGACGTGGAGCTGCTTCTGAGGAGGCAGGGCTTTGTGACGGAGCGCACACCCCTCAACGTGCTGATTGAGCGCTACCTTCCTCTGCAGTACCGGCAGCTGCTGATCCCAGTGGCTACCAGCGGGAATAAGGTTATTCCCAAGATGTAAAAGTTTGttagtgatttgttttatttaatacaaacaaaattatataaactgTGATATTAGTGCCAACATGGGTTTCTTTTCACTGTCCAGCAAGACCACACTGATCATGCTCAAGGCGCTATTGTCGCCAACAAGACATCAAATATGAAAGCAGTCGTCTACTTATAGGACTTGAAATCTTGTAATCTATCAAGTGCAAAAACAGAGTTTCACGTAAAACAGAATTGCCCCCAGtatcttttctatttttaataactttctgaatgtatatattctttaatgTAAACGTCTTTTATCAATGTTTGTCCTTTGCTTGTGTTGGGGGAGGGAGATaatttcaagttttattttattttattttgattatatatttcaagtcagaataaag

Function

GO: NA

KEGG:

id description
K11512 CENPT; centromere protein T

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78578 lncRNA downstream 73039 17364823 ~ 17370446 (-) True G62770
TU78515 lncRNA downstream 267650 17120154 ~ 17175835 (-) False G62715
TU78513 lncRNA downstream 267650 17172569 ~ 17175835 (-) True G62715
TU78464 lncRNA downstream 423933 17018790 ~ 17019552 (-) True G62675
TU78445 lncRNA downstream 452771 16990267 ~ 16990714 (-) True G62660
TU78718 lncRNA upstream 396360 17848158 ~ 17851113 (-) True G62880
TU78802 lncRNA upstream 516435 17968233 ~ 17969691 (-) True G62951
TU78844 lncRNA upstream 685682 18137480 ~ 18138298 (-) True G62981
TU78888 lncRNA upstream 732210 18184008 ~ 18186050 (-) True G63015
TU78936 lncRNA upstream 906027 18357825 ~ 18358910 (-) True G63057
AMCG00020375 mRNA downstream 10839 17425311 ~ 17432646 (-) True AMCG00020375
AMCG00020374 mRNA downstream 27837 17408554 ~ 17415648 (-) True AMCG00020374
AMCG00020372 mRNA downstream 41377 17392557 ~ 17402108 (-) True AMCG00020372
AMCG00020367 mRNA downstream 117954 17317097 ~ 17325531 (-) True AMCG00020367
AMCG00020363 mRNA downstream 303716 17138662 ~ 17139769 (-) True AMCG00020363
AMCG00020382 mRNA upstream 97953 17549751 ~ 17559095 (-) True AMCG00020382
AMCG00020385 mRNA upstream 208063 17659861 ~ 17673675 (-) True AMCG00020385
AMCG00020392 mRNA upstream 256315 17708113 ~ 17761880 (-) True AMCG00020392
AMCG00020391 mRNA upstream 324186 17775984 ~ 17794499 (-) True AMCG00020391
AMCG00020390 mRNA upstream 353733 17805531 ~ 17810647 (-) True AMCG00020390
TU78391 other downstream 650318 16792866 ~ 16793167 (-) True G62618
TU78161 other downstream 1167912 16272451 ~ 16275573 (-) True G62421
TU78153 other downstream 1188366 16252788 ~ 16255119 (-) True G62415
TU78145 other downstream 1323332 16118989 ~ 16120153 (-) True G62409
TU78131 other downstream 1340746 16098900 ~ 16102739 (-) True AMCG00020316
TU78680 other upstream 158866 17610664 ~ 17626189 (-) True G62853
TU78823 other upstream 542746 17994544 ~ 17997017 (-) False AMCG00020403
TU78814 other upstream 554370 18006168 ~ 18015860 (-) True G62961
TU78822 other upstream 585244 18037042 ~ 18039960 (-) False G62961
TU79413 other upstream 3860404 21312202 ~ 21312605 (-) True G63464

Expression Profile