RNA id: AMCG00020374


Basic Information

Item Value
RNA id AMCG00020374
length 1563
RNA type mRNA
GC content 0.57
exon number 12
gene id AMCG00020374
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17408554 ~ 17415648 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGGAGGCCAGGCTTCAGCTCCTCGCAGTGCCCCGGCTCTCCTGCGCTGTGCACACTGGGGCTGCACTGAGTGCTGGAGGAGAACGATTTGGATGGGATAAACACTCGTATGGTTACCACGGCGATGACGGGCACTCCTTCTGCTCCTCAGGAACTGGGCAGCCGTATGGCCCCACATTCACAACGGGtgatgtgattggctgctgtgTTAACCTCATCAACAACACCTGTTTCTACACCAAGAATGGGCACAGTCTAGGTATAGCTTTCACCGACCTTCCTCCCAACCTTTACCCAACCGTAGGCCTGCAGACTCCTGGGGAGATCGTGGATGCCAACTTCGGGCAGCAGCCGTTTGTGTTTGACATCGAGGACTACATGAGCGAGTGGAGAGCCAAGATCCATGGCATGATCGCACGCTTCCCCATCGGCGAGCGCCTTGGGGAGTGGCAGGCTGTGCTGCAGAATATGGTGTCTAGCTACCTGGTGCATCATGGGTACTGTGCCACAGCAACAGCCTTTGCCCGGGCAACAGAAACCATGATCCAGGAGGAACAAGCCTCAATAAAGAACAGACAGAGAATACAGAAGTTAGTTTTAGCAGGCAGGGTTGGAGAAGCCATCGAGGCGACACAGCAGCTGTACCCCGGACTCCTAGAACACAATCCTAATTTACTCTTCATGTTAAAGTGTCGGCAGTTTGTGGAGATGGTGAATGGCACAGACAGCGAGGTCCGCTGCTTTAGCACTCgctctcccaagtcccaggacAGTTACCCTGGCTCACCCAGCCTGAGTCCACGCCATGGAGCCACCAACCCTCACCTCCACGGCGCAGGGGCAGACAGCCCCACCTGCAGCAATGGGGTAGCACCCGGGAAGAACAAGCAGAGCCACAGTAAATACCCTGGAATCagctccacctcctcctcctcttcttcctcccctTCCTCAGTCAACTACTCTGAGTCCAACTCCACTGACTCCACCAAGTCCCAGCCCCACAGCAGCACCAGCAACCAGGAGACCAGTGACAGTGAGATGGAAATCGAGCCAGAGCATTACACCAACGGGGTCCTGGAAAACTCCTCGGCCCGCATCATGAACGGCACCTACAAACACGAGGAGATCCTGCAGACGGATGAGTCCAGCCTGGGCAACGGCGTGGCAGAGGATGCCTGTGCCCCCAGGCAGCTGTGCGGAGGGAACCAGGCGGCCACTGAGAGGATGATCCAGTTCGGCCGTGAGTTACAGGCCCTCAACGAGCAGCTGTGCCGCGAGTACGGCAAGAATGCCATGCACAAGAAGATGCTTCAGGACGCGTTCAGCCTGTTGGCATATTCTGATCCCTGGAACTGCCCAGTGGGCCAGCAGCTGGACCCTATGCAGAGAGAGTCTGTCTGCTCCGCTCTCAACAGCGCCATTCTGGAGTCGCAGAACCTGCCAAAGCAGCCACCCCTGATGCTGGCTCTTGGTCAGGCCACCGAGTGTGTTCAGCTGATGGCCCGTGTGCGCTCTGGCTCCTGCTCCTTCGCCAGGGTCGACAACTTCTTGCACTAG

Function

GO:      GO:0008536

KEGG:

id description
K23334 RANBP9_10, RANBPM; Ran-binding protein 9/10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78578 lncRNA downstream 38108 17364823 ~ 17370446 (-) True G62770
TU78515 lncRNA downstream 232719 17120154 ~ 17175835 (-) False G62715
TU78513 lncRNA downstream 232719 17172569 ~ 17175835 (-) True G62715
TU78464 lncRNA downstream 389002 17018790 ~ 17019552 (-) True G62675
TU78445 lncRNA downstream 417840 16990267 ~ 16990714 (-) True G62660
TU78718 lncRNA upstream 432510 17848158 ~ 17851113 (-) True G62880
TU78802 lncRNA upstream 552585 17968233 ~ 17969691 (-) True G62951
TU78844 lncRNA upstream 721832 18137480 ~ 18138298 (-) True G62981
TU78888 lncRNA upstream 768360 18184008 ~ 18186050 (-) True G63015
TU78936 lncRNA upstream 942177 18357825 ~ 18358910 (-) True G63057
AMCG00020372 mRNA downstream 6446 17392557 ~ 17402108 (-) True AMCG00020372
AMCG00020367 mRNA downstream 83023 17317097 ~ 17325531 (-) True AMCG00020367
AMCG00020363 mRNA downstream 268785 17138662 ~ 17139769 (-) True AMCG00020363
AMCG00020359 mRNA downstream 334312 17072789 ~ 17074242 (-) True AMCG00020359
AMCG00020354 mRNA downstream 351312 17049350 ~ 17057242 (-) True AMCG00020354
AMCG00020375 mRNA upstream 9663 17425311 ~ 17432646 (-) True AMCG00020375
AMCG00020373 mRNA upstream 27837 17443485 ~ 17451798 (-) True AMCG00020373
AMCG00020382 mRNA upstream 134103 17549751 ~ 17559095 (-) True AMCG00020382
AMCG00020385 mRNA upstream 244213 17659861 ~ 17673675 (-) True AMCG00020385
AMCG00020392 mRNA upstream 292465 17708113 ~ 17761880 (-) True AMCG00020392
TU78391 other downstream 615387 16792866 ~ 16793167 (-) True G62618
TU78161 other downstream 1132981 16272451 ~ 16275573 (-) True G62421
TU78153 other downstream 1153435 16252788 ~ 16255119 (-) True G62415
TU78145 other downstream 1288401 16118989 ~ 16120153 (-) True G62409
TU78131 other downstream 1305815 16098900 ~ 16102739 (-) True AMCG00020316
TU78680 other upstream 195016 17610664 ~ 17626189 (-) True G62853
TU78823 other upstream 578896 17994544 ~ 17997017 (-) False AMCG00020403
TU78814 other upstream 590520 18006168 ~ 18015860 (-) True G62961
TU78822 other upstream 621394 18037042 ~ 18039960 (-) False G62961
TU79413 other upstream 3896554 21312202 ~ 21312605 (-) True G63464

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00025518 True 2573 mRNA 0.50 15 NC_007129.7 21951551 ~ 22020509 (+)