RNA id: AMCG00020378


Basic Information

Item Value
RNA id AMCG00020378
length 5840
RNA type mRNA
GC content 0.43
exon number 4
gene id AMCG00020378
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17538125 ~ 17549842 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaaaaagaaaaaaaaaaagaaaaaaggtgcaGATTTACGTTTTTGCAGCGGACAACAAGAGCCTCCAGTGCAGTCAGTTGTGCAATGCAGGACTGGGTTTCTCAGCTGGCCAGGCCTTACGTTACCGTTTTCCCAATAGGTTATTATTGTTAGGGTAGGAGAGACGGAAGGAGAAATACaacatataagaaaaaaaacagaaacaaaaaatggagAGGAGAGCTCCTAGGAGGGAGTTGGGGAGGTCGGAGTTAGCGGGCTGTGAAAGGACTCTTTGCACCTTGAATTACTCCAAATAACCGTACGATCATATAGAGAGGAAGattttgctttatttattttagttttctccgAAACCCAAAGCTGTATCGTCCAAACAAAGGTACCGGAAGATGGCAGGCAGATAAAGATGCCCGCTGGCACCAGGGGCAGGATCGTGACATGATGGGCTGTGGGACGAGTAAAGTACTTCCCGAGCCGCCCAATGACGTCCAGCTCGACCTGGTGAAGAAGGTGGAGCCCTACACAGGGCAGAACACGGACAAGTATAAGCACTTCATCACAGACGATGGCAGTGGGGCAAAGACAGGGGAGAAGATATGCTCCCCATCCCCAGCCCAGGCCGGACACAACCCCTACAGCCCGGCCGGGGATCTTCTCCATGGACACCAGGACACCAGCGACCCCCGGAGGAACAAGGTGGCCAAATACCGGGCCAAGTTCGACCCGCGAGTGACGGCCAAGTATGATATCAAGGCCCTGATTGGCCGCGGCAGCTTCAGCCGGGTGGTGCGCGTGGAACACAAGAGCACCAAGCAGCCCTATGCCATCAAGATGATCGAGACCAAGTACCGGGAGGGGCGGGAGGTGTGTGAATCGGAGCTGAATGTGCTGCGGCGCGTGCGGCACACCAACATCATCCAGCTGATCGAGGTCTTCGAGACGCAGGAGCGGGTCTACATGGTGATGGAGCTGGCCACCGGGGGCGAGCTCTTTGACCGCATCATCGCCAAGGGCTCTTTCACGGAGAGGGATGCCACTCGGGTGCTGCAGATGGTGCTGGATGGGGTGAAGTACCTGCACACACTGGGCATCACCCACCGTGACCTGAAGCCCGAGAACCTCTTGTACTACCACCCCGGTACAGACTCCAAGATCATGATCACAGATTTTGGCCTGGCCAGCACCCGCAAGAAAGGGGACGAGTGCCTAATGAAAACGACTTGCGGCACACCTGAGTACATTGCACCAGAGATCCTGGTGCGGAAGCCCTACTCCAACGCGGTGGACATGTGGGCCCTGGGCGTGATCTCATACATCCTCCTCAGTGGCACCATGCCCTTTGAAGACGACAACAGGACGAGGTTGTACAGGCAAATACTGAAGGGAAAATACAGTTACTCAGGGGAGAGTGACAATCTGTCAGTCCCACAGGACCAGGGCAGCAGTGCATTTGTACCTGTCACTCGAGAATCAGGCTCAGCGGAGATCTGCACAGAAGTGTGGAATTCGAAGAGTAAGCCCTGGCCTAGTGTTTCCAACCTGGCCAAAGACTTCATAGACCGTGTGCTGACGGTGGACCCCAGCGAGCGCATGACGGCGGGCCAGGCCCTGAAGCACCCCTGGGTGGTCAGCATGGCCGCCTCTTCCTCCATGAAGAACCTGCACCGCTCCATCTCCCAGAACCTCCTGAAGAGGGCATCCTCGCGCTGCCAGAGCACCAAGTCCGCCCAGTCCACACGCTCCAGCCGCTCTACCAAGTCCACCAAGTCTCGGCGCGTGCGGGAGAGGGAGCTGCGGGAGCTCAACCTGCGCTACCAGCAGCAGTACAATGGCTGAGGACAAGACTGGCCCAGGCCCACCTCCACTGCTGCTGTCCCGGCTCCCCCCACAAACACCCTCCaccctctgctctctctctctttctgttattctttccccattttgttttcatttttttttgtaactgtcttttatttatttattatgttctttTTCTTAAGGAAAATCTTGGTGGTTTTAAAGTTGAATGATCTGTTGAACAGAATTCTATAAAAGTGTTATGAAGGATTCTTTCCAAAGCCAAAAAAACAATCGTAATGACAACGGTTTCCACAAAGAATGCTGCTGTAGAAGTTGTGTAAAAGCCTCTATGAAAAGGCATTGTGAGTAAAGGAGCAGGCATGCCCCTGCTGTGAACCATGAGTGGAAGCATTAAgtctacaaaaaaacaaaggaagtcTGAggccttacacacacacaccttgggGCACAATGTCACTGTGTTAGAAATCAGTTTAACAATTACAgttgttacattttttcagcAAGTGATTTTCATATTAGAAATCTTTGCTAATGACTTTATCTGATCATATGAAGGTTTTAATTTCAAGGAGTGCTACCACTTAATTAAGCAAGCTGCCACAGAAGTATCTAGGTCTCtaggtaattaaataatatttgacaACTGAGCGCTGAAATGGCAAGACCATCTATGCAAATGTAGACGATCCCCTCAGACTTCTAACAGTGTTTATCTCCACCTTTAGTAACATGCTTATAGCTGTCTACCAATGGATTGCTAATCTTAGTCTgaggttattttatttgtattcctttccAATATTCAGTACAGTACTCTTGTCTTTGCACACTGTAAACACTCACTGGATGATAAACACCTCTAGGAATAGTATGATCTTTTTTTAGTGCCAGAACAAGCAGGCAGGGGTTAATTGACTGCAGATCTCTGGCCAATGTTtgccatgtatttatttaaaatgtttatttgttacCCACAGTAACTTTATTGAACTGTCAATGCGATTTGACATGAGTCCAATGCTTTAGATAGCCACAAGGCACAAGTTCAGAAAGATATTAACATGATCCTGTGAGCAATTGCAAAACCAGTATGCATGACCATGGCATACTGAGagtgatgttttaaatgcactccctgtgtgtgtgttttttaataggGAGTTTTGGCTAGCCCTGATGCacattatatctatattttttgtctcttcttcaagttatttaatttttttaaattccagccTCAAAGGACAGTAACATTTCCCTGGACATGTTGAAAGGAAAGTAGGCAGATTTACTTGGAAGCAGAGTGTTTGTAAACATGACTCGTGTACCcaggaagaaaggaaggaagcTTGACTGAGCTGACTGTGCCTGTTCATCCCAGCTCTAAGTTTTTCTTCCCTTCATGCTTTGCTTTGTAATCGACACTGCAGAAGCTACTGTGCCAAATACTCAAATATGTCAAGTGTCTGATGTGTGGTTATCAAACTAAGAGGTGTTTATCAAGTGTCATTCCCTCTTCTCAGCCCCTACTATATATTGCATACTGAGCCTCAGTTCGCTTGAACCGTCTGGCTGCATCAGATTCCAATGTTCGCGATGTGGAACCTAGTCTCTCGGCCTTCGCACTGGAGCACGACTGACTTTCATCTGACAGTCAAGAGAAACGTTTGTTACAAACAGGAATAAAGTCACATTTACTAATTTGCAAAAAGCCAATCACTGCCAGTGCGTGAGGcagggactttttttttttttttcttccccccctgGTAAATCTTCTACAGTTAATTGAAGTTCACAGACTACTGTTAAGCTGCCACATATCTtgcccaatatatatatatatatatttttttttgtctggatGCTGTCTTCTGTATGATTTACCACTTCAACAAAGCACTTAAAGTGAAGTCCTATTTTTGTGGTTTCCTCTCTATATAAGTATCTAACGGTGTTTAGAAggatactttttgttttttgtaaaagtgtgtgggggggggggaaccaaacaaacatttcaatttcaaaatttaattttagaaGCCAGTATTACTTTGCCAAGAGGGAAACATGATGTAAAACATtctaaaatatacatgtattttgacAGGACAGCTGGATAAAACGACTGAACTGTTAACCTGCAGTGGTATCTTCATGACAGTGCCAGCTATACATACAGGGAAATcaaaaatgctgtttatttctATGGGCATTCATGGAGAATTTTAGTCATGCCAACAAAATCTGATCTTAACGATGTCTCCACTCCATTACCAGCATGGGGAGCTTACACTGTGTTTCTGTAGTGTCACTTTCACCAGCATAGATGACCTTACCCGCTTTTAGAAAAGGATTATATAATTATGTCATTATTAGATCATTTTAAGGCCTCTAAACACAAAGTGTAATTCACAtccttgttgtgttcctagacTCTCAGCCCAGGGTGTTCTGGGTAGTTTTTCTTGCCAAACTAGTTTATTACATAAGCTAGTTAATTGAATAAGCTGTGAGTTGCTCACTGTATTGCTCACAAACCTAGAAGACACTGAAAAGGTCTGTCAAAGGTGTTTTGTGATTTACAGTGCTAGTTGGGAAGACGTCTGTTGGTTGACAGGGGTGGGAGGTGCAGAACATACCTACATTGAGCGATTATGGCTGGTATGTTAGGGCACAAGTGCAGTTAGCCATTGCTTGTTTCCATGGTTTTTGACATCTGATCAGAAGAGTGCATTTCAGTGTAGTTTCTACAGAGAGAGTTTTCCACAACACTATGGATCTGGTTTTAGAAGGAGATATGAAGGACCTACAACACTGTTGCCATTGAGTATATTATTCCTTATGTTTTTTAAGGAACATAGtttggatttttacattttgtcttttatttttaggttgGGGGGGGGCTTTACAATGATATAGTCAACAAGACCAGCTTTACCAAACTTTATTTGTTTCCTGGGGGGTGGGGTTCTTGTGatctttaatgttatttaaccatttacagtttttactttttatttttttttcaacgAGATGTGAATTTTGAAATACTGGAATTGCTGAAGAGCTGACGTGAATCATTGTGGTCCATGCTGTCTTCGTCTCAGTTGCTGAATGGGTTAACTCGGATACCAGTGTTTCACTTTGAGAAGGAGACCGCATGCTTTTCGTTGCCCTGGACCTGTAACTGCACGATGACTGCAGTCGTCTTTTGCGTTTGACCCTAGCACTTTTAAAGTGACCTGTGGATAAAAGTGGATGTCTGGgtcccttttttaaaataaatagtacttgtattttgtttataacaCTTTTGATAGATTCTTGACTATCACATTGCCTTATCTGTTGTGACCAAAAATATTTCAGTCAAGGTATTTGAGCATCAGAAGACACTGATTGTCTTAACACTGATGCCTTCTTTACTATGTTAATTTTAGTTGTCAGACTTGTAATTAAAATCAAGCACTAATTAAAGAATGAGAAGTCACCCACAGTGTTGCCTATATTTAAACTGTGGTTACTTATAGCTCTTCAATGGCAACATAATAAATTACACATGGTCAAGATGTTGTAAATTAATTAGCAGATTGAGCCTGAAGCCATTTATAATAGCTTGGTTTACTTCACAGTTACACACTTTGCAGGACTGTGTAATGAACAGATACTTTTTTATAGTAATTTgtaggaataaataaaaatgtttttgtatttactgtttatgTTTTGATATTTCATATACATATGGTTCACCTGAAACTCATTCTCAAGGTGAGTTTGTGCCCTTTACAGTACAAAGCGAAAAACAGCACTGTCTCCTTAtcagaagttattttttttaaatatatgtgtttgcatcagatgtatttttaaatgtgtttgtgtgtgtttataatgaaGGTTaatgaatagatttttttatttactttttttaatgatgaacTGGTTCAGTCTTAGTTTTGTGTATAATGTGCctacaaaataaaccatataaCTTTT

Function

GO: NA

KEGG:

id description
K08808 PSKH; protein serine kinase H

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78590 lncRNA upstream 34862 17404385 ~ 17503263 (+) True G62781
TU78603 lncRNA upstream 103925 17433642 ~ 17434200 (+) False AMCG00020370
TU78471 lncRNA upstream 491975 17030193 ~ 17046150 (+) True G62681
TU78470 lncRNA upstream 502627 17031817 ~ 17035498 (+) True G62680
TU78429 lncRNA upstream 548546 16987319 ~ 16989579 (+) True G62654
TU78749 lncRNA downstream 404481 17954323 ~ 17955274 (+) True G62909
TU78758 lncRNA downstream 431191 17981033 ~ 17983521 (+) True G62912
TU78763 lncRNA downstream 438006 17987848 ~ 18032139 (+) True G62916
TU78838 lncRNA downstream 585151 18134993 ~ 18138267 (+) True G62975
TU78859 lncRNA downstream 647737 18197579 ~ 18200101 (+) False G62989
AMCG00020379 mRNA upstream 17921 17517827 ~ 17520204 (+) True AMCG00020379
AMCG00020380 mRNA upstream 37848 17472897 ~ 17500277 (+) True AMCG00020380
AMCG00020371 mRNA upstream 68660 17459144 ~ 17469465 (+) False AMCG00020371
AMCG00020376 mRNA upstream 84361 17452928 ~ 17453764 (+) True AMCG00020376
AMCG00020370 mRNA upstream 95414 17433665 ~ 17442711 (+) True AMCG00020370
AMCG00020381 mRNA downstream 9695 17559537 ~ 17584315 (+) True AMCG00020381
AMCG00020383 mRNA downstream 36295 17586137 ~ 17591308 (+) True AMCG00020383
AMCG00020384 mRNA downstream 47291 17597133 ~ 17610083 (+) True AMCG00020384
AMCG00020386 mRNA downstream 274975 17824817 ~ 17831066 (+) True AMCG00020386
AMCG00020388 mRNA downstream 287541 17837383 ~ 17848350 (+) True AMCG00020388
TU78611 other upstream 66256 17459160 ~ 17471869 (+) True AMCG00020371
TU78405 other upstream 722268 16814374 ~ 16815857 (+) True G62632
TU77751 other upstream 3068825 14467800 ~ 14469300 (+) True AMCG00020281
TU77582 other upstream 3587078 13948426 ~ 13951047 (+) True AMCG00020267
TU77503 other upstream 3671562 13863477 ~ 13866563 (+) True AMCG00020255
TU78735 other downstream 378486 17928328 ~ 17928904 (+) True G62895
TU78775 other downstream 508716 18058558 ~ 18061864 (+) True AMCG00020408
TU78779 other downstream 517945 18067787 ~ 18072043 (+) True AMCG00020407
TU78921 other downstream 782727 18332569 ~ 18334032 (+) True G63045
TU79166 other downstream 2047396 19597238 ~ 19600737 (+) False AMCG00020439

Expression Profile