RNA id: AMCG00020382


Basic Information

Item Value
RNA id AMCG00020382
length 2295
RNA type mRNA
GC content 0.47
exon number 10
gene id AMCG00020382
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17549751 ~ 17559095 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACGACTCAATATGGCTATTTTATCTATAGCAAATAACAGACTTCGAATTCAGATCTAGGCTAATCGATATGTAACTCTGTCTACTGCATCAAGAACTTCTGGCGAACTCTCCTCCTTCAGAAAGAGTGGCAGACACCGAGGGCAGCTTGGTCCGGGTGTTTTCAGTAAACAGACGGGATGGTGaatgtgtgtctatgtgtttgtgtttgagtgtCGTAGCAGCCGAAGCGATGCAGCCGCCGCCGAGCTATAGTGCCGTGGAGGAGGTGGACGCGGATCCCTCCCTCCGCAACGGGGTGTCGGAGTCACAGGGAGACGCCATCACTGCCGGCAAAACGGGTCCAAACTCAGAGCTGGTCAAGAGTGCAGAAGGTGACAGCACGGCAGATAAGGCGAATAGTAACGTCCAGACACAGGAGTGGAAGAAAGAGAAGGACGGCGGGCCCAGAATGACAAAGACATTTCTGAGGAAGCACTGCAAGAAACATAAGCTGTACCAGACTCCCTACCTGAATGACACTCTGTACCTGCACTTTAAGGGGTTTGTCTCGATTGAAAACCTGGAGGAGTACACAGGTCTGAAGTGCCTGTGGCTCGAATGCAACGGGCTGCAGAGAATCGAGAACCTGGGTGCCCAGACGGAGATGCGTTGCCTCTTCTTGCAGCAGAACCTCATTCAAAAACTGGAGAACCTGGAGCCCCTGCACAAACTGAGCTTACTCAACGTCTCCAACAACTACATTAAGACGATTGAAAATATCTCTTGCCTTCCCAAACTAAGTACTCTCCAGATTGCCCATAATCAGTTACAGACAGTGCAAGACATTGAGCAGCTAATGACCTGTCCCAGCATCAGTGTGCTCGATATGTCTCACAACAAATTGAACGATCCGGACATTGTCAGCGTTTTGGAGGCCATGCCTGATCTGCGTGTGTTGTATCTTATGGGTAACGAAGTTATTAAGAAGATCCCCAACTACAGGAAGACATTAATTATTCGCCTGAGACAGTTAACATACCTGGATGAGAGACCAGTGTTTCCAAAAGAGAGAGCCTGTGCCGAAGCCTGGGCTGCAGGAGGCCTGAAGgcagagaaggaggagagacagaggtgGGAGacgagagagaggagaaagatcCAGGACAGCATCGATGCTCTGACCGCCATCAGTGAGAGAGTCAGGGAGAATAAGAGACTCACGGAAATGGGGGAGAGAGGGGGAGGTGTCTCACAGATGCCAGTTGATGAGAGCCCAAAGGATAGTGTAGATGAACCGAAGGATTCTGCTGGGCACAGGCAGATCGAGAGGTTTGTGAGTGAGAGCATGCAAGCCCACAAAGAATTTGTGGAAGAGACCGCAGAAAGAAATTGCCAAGGTGATCAGGGAAGCACAGAGATTGCCACAGAGCTTCCACAGCCAAAGGAGCCCGATTCAATTCTCAGCGTCAAAGGAATGAAAGAGATGTCCCCTGCGCATTCGACTACAGAACAATCTGCCAACCAAATGAATACTGAAGGGGCCCTGATCACAGAGctggaacacacacactccttaGAGACTATTACGCTGGATGCTCAGCAAATGATCTGCATCGACGACCTTCCGGATTTGGAAGAGGTCGAGACAAATGATCTACATGAAACCGAAGACATACTGAATTTCCAGCCTGTTTACCGCCCGAAAATTGAAGTGCTCTCCGCAGCCAGCGATGACAGCGACTCGGAGTGGGAGACCGTGCAGGCACCGATAGAGGAGACTCCTGCAGCACCATTGGAGCTGGAACCAGCGTCACAGTTTTTCATCCAAGTCTCAGAAAACCATATGGCACTCAAAACAGAGAGCCTGGAGCCAAGCAGCCATATCGTTGGGCAAAGTGTGGAAGAAGATACGCCACAGGAACAAGAGACTTTGGACTGGCCAGAGAAAGCACAGGAGGTTTATGGTTCTGGTAAGAAAACCAGATGTCTTATAGAAGAATTAGATTAGGTTCAAGGCAAATAAACTGCCAACATGGGCTCTTTGGTAGAAACCTGATGCCAGTCTTTGGTATATTTACTCTACCAAGGACTCATTACAACTCTGTTTTAATGGGAGAACAGTAGAGGTTTACTAATAAAGCTATTATTGATATTCATGtgtaatagttattttaattgtgcatgTGTGGGTGACATTTTGACTGCACAAAGAACACAGTAAGAAAAGttatatggtttattttgtagGCACATTATACACAAAACTAAGACTGAACCAgttcatcattaaaaaaagtaaataaaaaaatctatt

Function

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0001539 cilium or flagellum-dependent cell motility biological_process
GO:0035082 axoneme assembly biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0003305 cell migration involved in heart jogging biological_process
GO:0001947 heart looping biological_process
GO:0003314 heart rudiment morphogenesis biological_process
GO:0005929 cilium cellular_component

KEGG:

id description
K19750 DNAAF1, LRRC50, ODA7; dynein assembly factor 1, axonemal

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78578 lncRNA downstream 179305 17364823 ~ 17370446 (-) True G62770
TU78515 lncRNA downstream 373916 17120154 ~ 17175835 (-) False G62715
TU78513 lncRNA downstream 373916 17172569 ~ 17175835 (-) True G62715
TU78464 lncRNA downstream 530199 17018790 ~ 17019552 (-) True G62675
TU78445 lncRNA downstream 559037 16990267 ~ 16990714 (-) True G62660
TU78718 lncRNA upstream 289063 17848158 ~ 17851113 (-) True G62880
TU78802 lncRNA upstream 409138 17968233 ~ 17969691 (-) True G62951
TU78844 lncRNA upstream 578385 18137480 ~ 18138298 (-) True G62981
TU78888 lncRNA upstream 624913 18184008 ~ 18186050 (-) True G63015
TU78936 lncRNA upstream 798730 18357825 ~ 18358910 (-) True G63057
AMCG00020373 mRNA downstream 97953 17443485 ~ 17451798 (-) True AMCG00020373
AMCG00020375 mRNA downstream 117105 17425311 ~ 17432646 (-) True AMCG00020375
AMCG00020374 mRNA downstream 134103 17408554 ~ 17415648 (-) True AMCG00020374
AMCG00020372 mRNA downstream 147643 17392557 ~ 17402108 (-) True AMCG00020372
AMCG00020367 mRNA downstream 224220 17317097 ~ 17325531 (-) True AMCG00020367
AMCG00020385 mRNA upstream 100766 17659861 ~ 17673675 (-) True AMCG00020385
AMCG00020392 mRNA upstream 149018 17708113 ~ 17761880 (-) True AMCG00020392
AMCG00020391 mRNA upstream 216889 17775984 ~ 17794499 (-) True AMCG00020391
AMCG00020390 mRNA upstream 246436 17805531 ~ 17810647 (-) True AMCG00020390
AMCG00020389 mRNA upstream 254220 17813315 ~ 17816888 (-) True AMCG00020389
TU78391 other downstream 756584 16792866 ~ 16793167 (-) True G62618
TU78161 other downstream 1274178 16272451 ~ 16275573 (-) True G62421
TU78153 other downstream 1294632 16252788 ~ 16255119 (-) True G62415
TU78145 other downstream 1429598 16118989 ~ 16120153 (-) True G62409
TU78131 other downstream 1447012 16098900 ~ 16102739 (-) True AMCG00020316
TU78680 other upstream 51569 17610664 ~ 17626189 (-) True G62853
TU78823 other upstream 435449 17994544 ~ 17997017 (-) False AMCG00020403
TU78814 other upstream 447073 18006168 ~ 18015860 (-) True G62961
TU78822 other upstream 477947 18037042 ~ 18039960 (-) False G62961
TU79413 other upstream 3753107 21312202 ~ 21312605 (-) True G63464

Expression Profile