RNA id: AMCG00020383


Basic Information

Item Value
RNA id AMCG00020383
length 1899
RNA type mRNA
GC content 0.55
exon number 6
gene id AMCG00020383
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17586137 ~ 17591308 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTACTGACTCACACCCACCTCCAGCACTGGGGCTAAGTCTAACGACTTTACTGCTATAGAGTGTCAAATTGTAGACGCCACCTGTGTCTTCAGTGTTTTGTCCAGGTTTTTGGAAAGGAAGAGTCCAGCTCTCGACACAGCCATGGAACCCATGCCCCAGAGCTCTCTAGGAGGCAGCCCCCAGCAGCCCCTCCCAGCAGTCATCATCGGAAATGGTCCCTCTGGTATCTGCCTGTCTTACTTCCTGTCTGGTCACCGGCCCTATGTGAAGGAATCAGCTGCCCATCCCAACCCCATTCTTCACAGGAAGCTGCAAGACATTGTAGGACAGTCCCTACTGGAGCAGTTCCTGTGTGAGGGCCTGGAGGGGCGGTCCCCTAGCCCGCTGGCTCTGCTCTTCGACACACTGGTGCGGCCTGATGGAGACCTGGGGGGTTCGGCCGAGTCGCAGCTGACCTGGCGGAGGGAGGCGGGCCACTGCGTCCCTCATCTGGTACTGGGCAAGGGCCCCCCAGGGGGAGCATGGCATTCTATGGAGGGCTCCATGTTCACGCTCAGCCTGGGAGACTGGATGGAGCTGCCCAGCATGCGGTTCAGAGACTGGATGAGGCGCAGAGGAAGaCACCTAAGGAATGACAGAGCCACCACCAGAGACATAGCCCAATACTACCAGCACTATGTGAAGGAGTTCTCCCTGCAGGAGCACTTTGTCCTGGGCTCTGTGGTCACCTCAGTACGGCCTCTGCAGGGACATTCAGTGGCACTGGACCCTGCAGAGGAGATGTGTGGACAGCCTGGTGGGGGGGCAGATGCCCCACCAGAGATGTATGAGATCCGGGGCTTCCATGAGGTGGAAAGCGGGAATGCTAGCCCTTTCTGTCTGTATGCCCAGAATGTGGTGCTGGCCACGGGGAGTTACGACAGCCCATCCCGTTTGGGGGTGGAGGGTGAGGATCTCCCACATGTGTTCCATACCATCAGGGACCTGGAGCGCGCCCTGGAGATGCAGCAGCTGGACCCAGACTCAGACCCAGTCCTGATTGTGGGCGCTGGTCTCACAGCCGCCGACGCAGTCCTCCTGGCCAGACACAGCAACGTCCCGGTGCTGCATGCCTTCCGCCGTGCGGTCACCGACTCTGGCATGGTCTTCAGCCAGCTGCCACAGCTCATGTTTCCTGAGTACCACAAGGTCCACAGCATGATGGCTGAGCAGAGCCTGTGCTCCTGTGGGCCCTACCAAGGGTACACCAGCCTGCCCCGGCACTGCCTGCTGCGGCTCTCCCCAGACAGGAAGTGCCTGCTGGAGGACGCCGGTGGGAAAAGAACCGTCTTCAACATCTCCATGGCCTTCATCCTTATTGGCTCCAACCCCAATCTGTCCTTCCTGCCTGACCATGGCAGGCCGCTGGCCCTGGACCAGCAGCAGCCGATCAGCTCAAAGCGGAACCCCCTGGACACTGAACTCTTCACATATGAGTGCGTGAGGCAGCCCGGCCTGTACGCCCTGGGGCCCCTGGCTGGAGACAACTTTGTCCGTTTCCTCCAGGGCGGAGCCCTAGGGGTGGCTGCCTCCTTGCTAAAGAAAATGGACTCCACTGAAATGGCATGAAAATGTActgatatataaaatatatagtgcactttgtttttaaaatctttttcagatttttaaagTCTTAAGAAGGCTGCATCAGCTTTATCAGCATTGGGGCAGGAAACACTAAGTGTTTGTCGTCTCCAGCTTAATTCcgtattattttgatgttgttttctttgttatttattctactctgtttatataataaaatatatttttcttctttaaagcaatattttttgTAGGTACTACTGTTAAGTTTTTATATCACcaagtgctttcatttttaagtcTTGAAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78590 lncRNA upstream 82874 17404385 ~ 17503263 (+) True G62781
TU78603 lncRNA upstream 151937 17433642 ~ 17434200 (+) False AMCG00020370
TU78471 lncRNA upstream 539987 17030193 ~ 17046150 (+) True G62681
TU78470 lncRNA upstream 550639 17031817 ~ 17035498 (+) True G62680
TU78429 lncRNA upstream 596558 16987319 ~ 16989579 (+) True G62654
TU78749 lncRNA downstream 363015 17954323 ~ 17955274 (+) True G62909
TU78758 lncRNA downstream 389725 17981033 ~ 17983521 (+) True G62912
TU78763 lncRNA downstream 396540 17987848 ~ 18032139 (+) True G62916
TU78838 lncRNA downstream 543685 18134993 ~ 18138267 (+) True G62975
TU78859 lncRNA downstream 606271 18197579 ~ 18200101 (+) False G62989
AMCG00020381 mRNA upstream 1822 17559537 ~ 17584315 (+) True AMCG00020381
AMCG00020378 mRNA upstream 36295 17538125 ~ 17549842 (+) True AMCG00020378
AMCG00020379 mRNA upstream 65933 17517827 ~ 17520204 (+) True AMCG00020379
AMCG00020380 mRNA upstream 85860 17472897 ~ 17500277 (+) True AMCG00020380
AMCG00020371 mRNA upstream 116672 17459144 ~ 17469465 (+) False AMCG00020371
AMCG00020384 mRNA downstream 5825 17597133 ~ 17610083 (+) True AMCG00020384
AMCG00020386 mRNA downstream 233509 17824817 ~ 17831066 (+) True AMCG00020386
AMCG00020388 mRNA downstream 246075 17837383 ~ 17848350 (+) True AMCG00020388
AMCG00020387 mRNA downstream 281515 17872823 ~ 17888787 (+) True AMCG00020387
AMCG00020399 mRNA downstream 314289 17905597 ~ 17912140 (+) True AMCG00020399
TU78611 other upstream 114268 17459160 ~ 17471869 (+) True AMCG00020371
TU78405 other upstream 770280 16814374 ~ 16815857 (+) True G62632
TU77751 other upstream 3116837 14467800 ~ 14469300 (+) True AMCG00020281
TU77582 other upstream 3635090 13948426 ~ 13951047 (+) True AMCG00020267
TU77503 other upstream 3719574 13863477 ~ 13866563 (+) True AMCG00020255
TU78735 other downstream 337020 17928328 ~ 17928904 (+) True G62895
TU78775 other downstream 467250 18058558 ~ 18061864 (+) True AMCG00020408
TU78779 other downstream 476479 18067787 ~ 18072043 (+) True AMCG00020407
TU78921 other downstream 741261 18332569 ~ 18334032 (+) True G63045
TU79166 other downstream 2005930 19597238 ~ 19600737 (+) False AMCG00020439

Expression Profile