RNA id: AMCG00020386


Basic Information

Item Value
RNA id AMCG00020386
length 4534
RNA type mRNA
GC content 0.43
exon number 2
gene id AMCG00020386
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17824817 ~ 17831066 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTCACTGAAGTCCCTGATTGCGTGTGTCGGTACAGAAGGAAAGGCGGAAGCAAGGGCCGTGGATGTCCCGCAGgcAGAAGAAGAATTTAAGAAAAAGATGAGCAGGGGGCGGggagtaaagaaaaaaattgcTTTCGATAAAGCAACAGATCTTGACACTTTCAGCTCAGATATTCTCAATGAAATCAAGGAACTCTTCAGCAAAAGTGTTGCGTATCGTAAGCCTCCCACCAGGGAATGGCACATCCCAGACCCTAATGAAACTTTGAAGTATGACCCCCAGCAATACGGAAGTCTGCAGGCCCTAAAAGAGTCCCTGAACGAGGTTAAGAATCAGCTTAGTGACATGAACCTGGAAGTATGGCATCAGCACACGTCCTTCACCAACAAGGCCGGCAAGGTCATTTCCCACGTACGGACCTCTGTCAATGCTGAGATCTGCACACAGGCCTGGTGCAAATTCTATGAGATTCTGGGCACCTTTCCCTTAATCCCTGAGAAGTCCCTGCAGCATGGGGAGCTCAactctgtgcatctctgtgagGCCCCCGGGGCTTTCATAGCCAGTTTGAATCACTACCTCAAGTCCAACCCCCTTTACTGCGATTGGGCGTGGGCAGCAAATACCCTCAACCCTTACCATGAGGCCAATGACAATGGCATGATGATAATGGATGACCGGCTGATTGCCAGCACGCTGCCCTGGTGGTTCTTTGGCTCAGACGACACTGGAGACATCATGATCCAGAAGCACCTGCTGGAACTGCAGACCTTCACCCGCAACATGCGCTCCATTGACCTGGTGACGGCAGACGGCAGCTTTGACTGCCAGGGGAACCCCGATGAGCAGGAGGCTTTAGTGGCACCGCTGCACTACTGTGAGGCCGTCAGTGCCCTCATGCTGCTCAGCATAGGTGGATCCTTTGTCTTAAAGATGTTCACCTTGTATGAGTACTCTTCTGTCTGCCTGCTGTACCTCCTGAATTGTTGTTTCAGGACTGTGCATGTGTTTAAGCCTGCAACTAGCAAAGCTGGGAATTCTGAAGTGTATGTGGTTTGCTTGGAGTATTTTGCCAAAGGTGCAGTGAGGCCATTGCTCTCTAAACTGATTCGCAACTTTGGCCTGGACATCGCCAGCCGAGCCCTATTCCCCAAGCATTTAATTCCAGAGTCGTTTCTAAAGCAGCACGAAGAAATCTGCACATTCTTTCACAAACTCCAGGCTCACACGATCAACGAGAACCTCCAGCTGTTTCACTTGATGAGCAACGTGCAAAAGGAAAGGCTGAACAAACTACGGGACTGTGCTGCAGAGTTCTACCTCCACCGGTTTCAAGTGCAGTACCTCCACCGAAGCAAGTGGCTCTCCAAATACGCCCTCCGTGGCTGCCACCTGAATAGCAGGCTATTTGGGCACAGAAAGCAAGTGGGTTCTTTCAATGAAAGGAAAGAACTAGAGACCCTTGCGTGGAAGGAGAAAGTTGAAAAGGGGTTCTACAAAGCTTGGATCGAAGAAcatgttttgggggattttgGTAAAGGTTGTGTCCTACAAGGCCCAGCCTGTGACTGTGACATTGACACTTGGTACGTCTTGGCAGGCGCGGCTTTGCCAAAGGTCCGAAGCTCCCCTTTCTGTGATTTGGAATTGCTGAACCATCTCAATGAAGCCCTAGAACAGTCTGGAGTAACTAGGGAAGTAGAAGCAAACTTGGGTACCAGCAGAACTGCCTCAATTCTAACGGCTGACCGCCTGCTGTCTGAAATATCCAGTCTCATTCAGGGGCAGCCAACCCATGCCTCTGCAGTGCAGGGGGACCAGTGCCTTGTGGTGGGGAGCCCATCCTTTCTTGGAGATGTGCAGCCAACCACTCACCTGTGCATTGAGTTTGCTGACCCACCGCCATGCCCCCCTGTGGACTTGGTGACTTTGCACGATGGGGAGCCAAAATACCAGCGGGAGTTCCTCGACTGCGTCCTCTGCTCACTGCACAAGCTGAAGACTGGAGGTTCGTTCGTTCTGCCCATCTTGTCCTCCTTCACCCGCTTCATGGCAGGGCTGATCCTCACCCTCCATCAGTGTTTCCGCTTGGTTACCTTCAGGTGCCCGACCTCGTCTGATGCCCTGGGGACCATTGCTGTGCTCCTGTGCAGCGGATACCAGCTCCCCAGTGGCAGGCTGCTTGAATTCCTGCAGGAAATGCATGGTGTCATGTGTGGCACCCCCAAGGTGAAGACTCCTCAGCAAGTGCTCCAGTTTGTTCCCATGGAGGTTCTTCTGAAAGGGGCACTCCCAGAGTTTCTGTGGACCATGAACACTGCCATTGCCAAGCACAAACTCCACTTGCTGGTGCAGGCAGAGCAGGAGTCGTTGATGTTGACCGATTAAAATTTGGGACATACCAGATTTTCATTCCTCTTTCTGGGCAGCATTCTCTCCAGATGGCCAAATTCGATGGTTACATTGGCTGAACTGTACCCAGTTGTTACTTGatccttttcttttattcaagaaaatatttgtttttgttttttttccccccaagagACTGTGATGTATGAAAGTAATTTGCATCATTTTGTAGACGGAAGATgctattaattttatttgatgtgtatgtgtacacacacctatatattattattttgaatgtgtgtctatatatacatgcacacatctatatattattttgaatatatatttttatattcattaatATTCTTCAATGCCACAAGTGTAGCTATTTGTCAAAATGGAACAGTCAAGCTAGACTTTTTCCCTATTTGTCTCCctaacattattatgatttaaaattcaCATTATAAGGTTTacaagtgaaaacattttaaatgtcttactttttttctgtacagGTTCAATAATcttattaaaagcatgcatttgtttgatctgtaataaaatgtaaagcagcTCTTTTAAACTACAATTCCACCTGACTGCTGAACTAGCAATTAAGACTGCTTAGAAAATTCCTTTTCCATCTCGGCTTGGTGTGTGTGACAGAAAGCCAGGAGGTAAGCCATTTATAAAAGTCATCAAGAAATGTTTCATCCTAATTTGTCCAAGCTATATTACATTCCAAAAACCTTTtctcacaatatatttttgaattgcCTGGCATTATGGAGGGAGagcaaacatgtattattttaaagattaattgagGGGAGCCTTTATGTCTTTGTGATTATTTGACTTCActaatctaaatctaaattacTACACAGTGTAGTGTGAGCTTTAGAAAGGACAGATTGAAGAAGAGGTAAAAAGTTTCCTGAGTCctgagtttaatttaaattttattaaGGTGGAATGAAATGGGCTTGCTGAAAATTTACTTTCCAGACATTCTTGTATTGTTATCTTGTTTTGTTCAAGGAACATGAAAACCCTAGTATTTGAAATGTCAGGGGGAAATTTTGTATATAACAATAACTAATGATCATAAATAACTATTGCACTTTTACCTAGGAAAGAATAGACCATTTAGTTTTTCCATGTATATTAATTCAGGTATGGATGttaatcaataattaatttgatttagtaAAGGAAGAGGGCTTCCAAACtgaacagcattttattttcattattgttgcTACAAATGTTTAAGATACCTGTGAAATAGAGACAGAAAAATCACAtcctttaaacttttttttttttttttttttactatatcCTACAGTTTATGGTTAACCCCAACAATTCTGTTATCGGGAACAGAATGGGATAGTTTTATATTGGTTTAATTGTTCTCCTGGAAGTAGTCCAGAGGgcataaaagaaaaagcatgcTTCCTTCCCATACCCCCCTTCAAAAATACAAGTGGTAACTATGAATTTTAatgatggaaagaaagaaagaaagatggcaAATGTGGTACTTAAGTCAACCAATGTAGCAACTATGGGGAAACAACACTGCCCGTTACGTGCTCTTAAGAATTGTCTATGACAGGTCTTCTGTGTCGTTCTGTGTACCCCTACTTAAACCGATGTCAAAATGATACAAAACGCCTATGTCACATAGAAACCATGTGCCTTGATTCCAGGTTGCAGGGCTCGGGTAACCGTATGAGTGACTTTTTAATCATGAGGAAGTGGGGTGTTGAGTTTCCTTGCTGCTGGTTCTGGTGGGATGCAGTGAATTTAAATCATCACTTGCAATACTTCATCCCAGTATCAGAGTTGTAATCTACTAAGAAGGATGGCATTGATCCGATAGCAAGAGGACCCAGAATGCTGGACTATCAATTTATTCTGCAAAGGTCATGACGCACAGATGAGTGTTGGAATATTTTTGATctattgtttatgtttatttttatttttagccacATATAGGAGCTGATTTATGTGATTATATGAGAGCGAGAAGCTTCCAGGTTTGCCAGAACTTGAGCTTGTGGTTCTGAGtcacataatttgtatttgtttttgctttaaggTTGAAAACCTGTTGTTTTCctcatgtaaatatatgtaaaatgttaatttatttgtct

Function

GO: NA

KEGG:

id description
K14590 CMTR2, FTSJD1, AFT; cap2 methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78590 lncRNA upstream 321554 17404385 ~ 17503263 (+) True G62781
TU78603 lncRNA upstream 390617 17433642 ~ 17434200 (+) False AMCG00020370
TU78471 lncRNA upstream 778667 17030193 ~ 17046150 (+) True G62681
TU78470 lncRNA upstream 789319 17031817 ~ 17035498 (+) True G62680
TU78429 lncRNA upstream 835238 16987319 ~ 16989579 (+) True G62654
TU78749 lncRNA downstream 123257 17954323 ~ 17955274 (+) True G62909
TU78758 lncRNA downstream 149967 17981033 ~ 17983521 (+) True G62912
TU78763 lncRNA downstream 156782 17987848 ~ 18032139 (+) True G62916
TU78838 lncRNA downstream 303927 18134993 ~ 18138267 (+) True G62975
TU78859 lncRNA downstream 366513 18197579 ~ 18200101 (+) False G62989
AMCG00020384 mRNA upstream 214734 17597133 ~ 17610083 (+) True AMCG00020384
AMCG00020383 mRNA upstream 233509 17586137 ~ 17591308 (+) True AMCG00020383
AMCG00020381 mRNA upstream 240502 17559537 ~ 17584315 (+) True AMCG00020381
AMCG00020378 mRNA upstream 274975 17538125 ~ 17549842 (+) True AMCG00020378
AMCG00020379 mRNA upstream 304613 17517827 ~ 17520204 (+) True AMCG00020379
AMCG00020388 mRNA downstream 6317 17837383 ~ 17848350 (+) True AMCG00020388
AMCG00020387 mRNA downstream 41757 17872823 ~ 17888787 (+) True AMCG00020387
AMCG00020399 mRNA downstream 74531 17905597 ~ 17912140 (+) True AMCG00020399
AMCG00020393 mRNA downstream 86903 17917969 ~ 17926416 (+) True AMCG00020393
AMCG00020394 mRNA downstream 99863 17930929 ~ 17941836 (+) True AMCG00020394
TU78611 other upstream 352948 17459160 ~ 17471869 (+) True AMCG00020371
TU78405 other upstream 1008960 16814374 ~ 16815857 (+) True G62632
TU77751 other upstream 3355517 14467800 ~ 14469300 (+) True AMCG00020281
TU77582 other upstream 3873770 13948426 ~ 13951047 (+) True AMCG00020267
TU77503 other upstream 3958254 13863477 ~ 13866563 (+) True AMCG00020255
TU78735 other downstream 97262 17928328 ~ 17928904 (+) True G62895
TU78775 other downstream 227492 18058558 ~ 18061864 (+) True AMCG00020408
TU78779 other downstream 236721 18067787 ~ 18072043 (+) True AMCG00020407
TU78921 other downstream 501503 18332569 ~ 18334032 (+) True G63045
TU79166 other downstream 1766172 19597238 ~ 19600737 (+) False AMCG00020439

Expression Profile