RNA id: AMCG00020393


Basic Information

Item Value
RNA id AMCG00020393
length 3051
RNA type mRNA
GC content 0.49
exon number 10
gene id AMCG00020393
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17917969 ~ 17926416 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccaGCTTACAACTAAAAGTGATCTGAACGACTTAGTTGAAAGCTACTGTTGacttttaatttctgaattAACAATAGTTCAGCAGCAATTTGTCGATGACATTATCCAGTGGACTCCTGGAGGACTGCAGTATTTTGCATCGTGCGATATGCGGCCTGGCCGGCTGGTGGCGCTGTAATTTAAACTCCGAGGCTGTTGTGCTTCTCTTGTCTGCTCGTGTAGCTGTAGCCTGAGCGCCGTGTCCGCGCTGTCAGTCTCCGTCTCTCCTCCGAACAGCGGCCATGGCTCTGCTGAAATCTGGCAAGATAATCTCCAGTGTTGGGGCTTACTGCCCTTCTCTGGCCGTGTTCCCCATCCGAGCCAGCTCCTGGTGGTCCAATGTAGAGATGGGCCCTCCCGACCCCATTCTCGGGGTGACTGAGGCCTTCAAGCGTGACACCAACCCCAAGAAGATGAACCTGGGGGTGGGGGCGTATCGCGATGACCAGGGCAAGCCCTATGTCCTCAGCTGTGTGCGCAAGGCAGAGACTCAGATTGCTGCCAAGAACCTGGACAAGGAGTACCTGCCAATCGGAGGCCTAGGGGAGTTTGCCAAGGCCTCAGCTGAGCTGGCGCTGGGACCCACCAACGAGGTCCTGAAGAGCGGCAGGTACGTCACTGTGCAGACCATTTCCGGTACGGGGTCCTTGAGGGTCGGAGGAAACTTCCTGTCCCGCTTCCACACTGCAAGTCGTGACGTCTACCTGCCCAAGCCCTCATGGGGAAACCACACCCCCATCTTCAGGGATGCTGGGATGCAGCTGAAGGCATACCGCTACTATGACCCCAAGACCTGTGGATTTGATGCCACTGGGGCCCTGGATGATATCTCTaAAATCCCAGAGAAAAGCATCATCCTGTTCCACGCCTGTGCCCACAACCCCACGGGCGTGGACCCCCGGCCCGAGCAGTGGAAGGAAATCTCTGCTCTGGTGAAGAAAAGGAACCTGTTCCCCTTCTTCGACATGGCATACCAGGGCTTTGCTAGCGGGGATATCGATCGTGATGCGTGGGCTGTGCGCCACTTCCTGGAGGAAGGCCACAACATCGTGCTCTCCCAGTCTTATGCCAAGAACATGGGGCTGTATGGTGAGCGTGTGGGGGCGTTCACGGTGGTATGCAGCGACGCTGAGGAGGCCAAGCGTGTAGAGTCCCAGCTCAAAATCCTGATCCGCCCCATGTACTCCAACCCCCCTGTCAACGGAGCCCGCATCGCCGCCACCATCATGAACACCCCAGATCTGCGCAAGGAGTGGCTGGAGGAGGTGAAGGGGATGGCTAACCGCATCATCAGCATGAGGGAGCAGCTGGTGTCCAACCTGAAGAAGGAGGGCTCCACTCACAACTGGCAGCATGTCACTGACCAGATTGGCATGTTCTGCTTCACTGGCCTAAAGCCTGAGCAGGTGGAGCATCTGACCAAGGAATTCTCAGTCTACATGACGAAGGACGGGCGCATCTCCATGGCTGGTGTCACTTCCGCAAACGTGGGCTACCTGGCGCATGGCATCCACCAGGTCACCAAGTAGACAGGCCACCTGGCCCCCCCAGCAACAAAGGGGTAGAGAGGGGATTATTGTGGCATTGGAAGAAAAGCCTTGGATACCgactgccaccaccatgacaaATTCACCAAGCCTTTACGATCATGTATCTCCCCCTTTGTAAAGAATCTCCTGTCGGTGTGTCTCGCCATATCTAGAACCTAGACAAAAACAACTTAGAAACTCTGGTCAGACCTCCTATTTCATTGAAGATTAGTAAACGTTGTTTTATTCTGTCCCCAACATTCAGGATGTCAACATTGCAGCTAACCCCCCTTATTGCCATGATTAGGGCCTTTGTTTAATTGATGATCTGGAAACTGAAGGGGGGGGAAAGAGAATAGAAACCAAATTGTGGAAAACTTAGCTATAGGTCAGACTTCTTGTTTACAGCTTCCTGATGGGTTGTCACTGGAGCACAACCTTGCTTCTTATGATCAAGTGGCTCTGCTCTTTGGTGGGATTCAACTTGAGGCTTCAGAGCAGCAGTGAATGGTCTGTTTTTGGACCTACTGTTTCATGTTCCTGCTCAACAGCAAGTAAATTTCCTAATTTGAAGTGAGAGTTGAAAACCCAATGCCCATCTGAgctgttttgtataataaattcCCTTTAGCGAACTGCTATTTTATTAGCATATCTGACTTCTGGGTTATGACTAATCATAAATTTAATCTCCACTTCTTCAACTTATTTAAACCTCACGCTTTGCACCAAGTCCATTTAGCCCCAGTGTTCCTCAAGTCATTCTCGCTCTTGCTCATTCTCGCTCTGTTTATTGGAGCAGGTTGGCCACCATGTGTGctaaagatatatttaataggTATATGCCTAATGTCTACATTTGAGAATCATCAGCGCTCTGACATCCCTGCAGCACCACAATCCAgctttgcattttcaaagtTGAAATTCCCCACGAGAGAGGAACAAGATTTTCCTGTAGCTGCAGTCCAGTGAAGACGGTTGTGTTTTTGAGGTTTAGAAGGCTTCTAATTGTTTGGTAGTTGTGGAAGTGGTGCGGTATAGCTAATTTCTCTCTCGTGCAGTTTAAACTTACTGGGAGCAGCTGTAACTGATGTCTCTTAATGTATTGAGTACATTTCCTgcatggaggaggagggagctttttacttttacaaaactaatttttaaagttaatttgctCGCCCTACCACATGGTTCAAGATGCAGGTTTGAAAAGTGAAGGctgatctatatattttatttattatcattattccccccccccccaaataaaatcTCTAAATTCTAAGTGCAGGTTTGAAAAATATTGGATGCTATTAACCTGACTTGGATACACGTCCCATACATTTACTCATTTCAAGTATCAAAGGCTATAGATCAGACTCAAGTCAAAGTACCGTGTATGATAATACCGAATGTATAAATGGAGGTGTATGTGATGTACACACTTTCTTCACTTTTAATATTCATTATGAATAAA

Function

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0006520 cellular amino acid metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0080130 L-phenylalanine molecular_function
GO:0004069 L-aspartate molecular_function

KEGG:

id description
K14455 GOT2; aspartate aminotransferase, mitochondrial

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78590 lncRNA upstream 414706 17404385 ~ 17503263 (+) True G62781
TU78603 lncRNA upstream 483769 17433642 ~ 17434200 (+) False AMCG00020370
TU78471 lncRNA upstream 871819 17030193 ~ 17046150 (+) True G62681
TU78470 lncRNA upstream 882471 17031817 ~ 17035498 (+) True G62680
TU78429 lncRNA upstream 928390 16987319 ~ 16989579 (+) True G62654
TU78749 lncRNA downstream 27907 17954323 ~ 17955274 (+) True G62909
TU78758 lncRNA downstream 54617 17981033 ~ 17983521 (+) True G62912
TU78763 lncRNA downstream 61432 17987848 ~ 18032139 (+) True G62916
TU78838 lncRNA downstream 208577 18134993 ~ 18138267 (+) True G62975
TU78859 lncRNA downstream 271163 18197579 ~ 18200101 (+) False G62989
AMCG00020399 mRNA upstream 5829 17905597 ~ 17912140 (+) True AMCG00020399
AMCG00020387 mRNA upstream 29182 17872823 ~ 17888787 (+) True AMCG00020387
AMCG00020388 mRNA upstream 69619 17837383 ~ 17848350 (+) True AMCG00020388
AMCG00020386 mRNA upstream 86903 17824817 ~ 17831066 (+) True AMCG00020386
AMCG00020384 mRNA upstream 307886 17597133 ~ 17610083 (+) True AMCG00020384
AMCG00020394 mRNA downstream 4513 17930929 ~ 17941836 (+) True AMCG00020394
AMCG00020396 mRNA downstream 18742 17945158 ~ 17950059 (+) True AMCG00020396
AMCG00020395 mRNA downstream 30292 17956708 ~ 17980551 (+) True AMCG00020395
AMCG00020408 mRNA downstream 133709 18060125 ~ 18065789 (+) False AMCG00020408
AMCG00020407 mRNA downstream 144204 18070620 ~ 18072051 (+) False AMCG00020407
TU78611 other upstream 446100 17459160 ~ 17471869 (+) True AMCG00020371
TU78405 other upstream 1102112 16814374 ~ 16815857 (+) True G62632
TU77751 other upstream 3448669 14467800 ~ 14469300 (+) True AMCG00020281
TU77582 other upstream 3966922 13948426 ~ 13951047 (+) True AMCG00020267
TU77503 other upstream 4051406 13863477 ~ 13866563 (+) True AMCG00020255
TU78735 other downstream 1912 17928328 ~ 17928904 (+) True G62895
TU78775 other downstream 132142 18058558 ~ 18061864 (+) True AMCG00020408
TU78779 other downstream 141371 18067787 ~ 18072043 (+) True AMCG00020407
TU78921 other downstream 406153 18332569 ~ 18334032 (+) True G63045
TU79166 other downstream 1670822 19597238 ~ 19600737 (+) False AMCG00020439

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00026477 True 2573 mRNA 0.42 10 NC_007129.7 21178721 ~ 21188768 (-)
grasscarp (Ctenopharyngodon idella) CI01000013_03493064_03499971.mRNA True 1462 mRNA 0.49 10 CI01000013 3493064 ~ 3500131 (+)