RNA id: AMCG00020394


Basic Information

Item Value
RNA id AMCG00020394
length 4016
RNA type mRNA
GC content 0.47
exon number 11
gene id AMCG00020394
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17930929 ~ 17941836 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCATGGACGGGCCATGTTGCGGCCGGAGATGGCGGTCAACAGCGAGACAGGTGACTGGGGCTGGAGTGAGGATGCCGGGGAGAGGGCCAGGCTGCTACAGAGCCCCAGCGTGGAGACGGGGCCTCAGGGGAAGGAGCGAGAGGGTGGCACCTCTGCCCTGGCTGCCGTGTTCATCGTAGTCAACGCTGCCCTGGGCGCCGGCTTGCTCAACTTCCCAGCAGCCTTCAACACAGCGGGAGGCGTCACCTCAGGCATTGTGCTGCAGATGTGCATGCTGGTGTTTATCATCAGTGGGCTGGTGATCCTGGCCTACTGCTCACAGGTCAGCAACGAGACCACTTACCAGGAAGTGGTGCGGGCCGTGTGCGGGCGTGTTCCGGGAGTGTTATGCGAGGTGGCCATCGCCGTCTACACTTTCGGCACCTGCATCGCCTTCCTCATCATCATCGGCGATCAGCTGGACAAGCTGATCGGAGCCACAGTCCATGAGTCGGAGGGTGCCGTTAGCAGCAGCTGGTACACTGACCGCAAGTTCACCATTGTCCTGACATCTGTGCTACTCATCCTGCCACTCTCCATCCCAAAAGAGATTGGCTTCCAGAAATATGCCAGTGCACTGAGTGTCATTGGTACCTGGTATGTCACTGTTGTTGTCATCGTGAAGTATATCTGGCCTGACAACAACGTGCTCCCAGGGTATATCCCCACGAGTCCTTCCTCATGGACCGCAGTTTTCAATGCAATGCCAACTATATGCTTTGGATTCCAGTGCCATGTGAGCAGCGTGCCCGTGTACAACAGTATGAAGAGGCGAGAGATCAAGCCCTGGGGTGGGGTGGTGACTGCTGGAATGATCATCTGTCTCTTCGTCTACACTGGCACAGGGGTGTGTGGGTTCCTGTCATTTGGCTCGAGCGTTAGCCAGGACGTGCTGATGTCGTATCCCTCAGATGACGTCGCTGTGGCCATCGCCCGGGCCTTCATCATTGTCTGTGTCGTCACCTCCTACCCTATCCTGCACTTCTGTGGCAGGGCTGTGCTGGAGGGGCTGTGGCTGCGGTTCCGCGGAGAGTCGGTGGAAGTGGACGTGGCGCTGGAGAGCCGGCGGCGGCTCTTACAGACATTGGTGTGGTTCGTGTTCACGCTCATCCTGGCGCTCTTCATCCCCGACATCGGCCGTGTCATCTCCATCATTGGGGGCCTCGCCGCCTGCTTCATCTTTGTCTTCCCAGGACTGTGTCTGATTCAAGCCAAGATGTCAGAGATTCAAGAAGTCAAACCTGCAAGCTGGTGGGCTCTGGTGTCATATGGCGTCTTCATGGTCACTCTGGGGGCTTTCATCTTCGGCCAGACCACCACCAATGCCATCTACCATGACTTCATGCACCACAGAAGTCAGTAATCACCTGGAAGGCAGTGAGAAAGAGAGcaaaagtatgtatgtatgtgtgtgtatgtgtgtgtatgtatgtgtgtgaaggGGAGAGAAGCTCTACACTGCCTTCTGCTGCACCATGGGATCCCAGGATGCAAGCTGACCAAACAGACTGAACAGATACATCATAGCTACTGGACTCCAGTGACCGCTTGACCTGCCGCCCCCATGTGCAACCTGTAGGGCTCTGCCAGTAACCCACAGCATCTCCTTCAGCCCCGCATGTCATCTGACCCACCGGTCGGGCTCCACCTGCATGCGTCCCGCCTCCTCCTGCAACAGGAACACCAACCTGGGAAGGACTTTCAAACAGCTCTAATGCAGCTGTCccatttgtgtatgtgtttgtgtgtgtgtatacatgccTATATATTCAGGGGGCTTATGGGTGATCTGTAGATCACTgtgacttaaaaacaaacaaacaaacaaaaaacattgggAAAACGGAATTCATCCTCTCAGAGCAGAGGCCACATGAGCTGCAAGGAGGAAGAACCAGCGTGCAAGTTGGTGATTgaaattaagtgtgtgtgtccctgcccACGCCAGCTTTAAACTGCATAAGGAAAACGCACAGTGTCAGATGGAAAGACTTatgccttttttcctttttacttgATTTATTGCAGTCCCTAACAGACTCTCCTGGGAAGGAGCTGGTTTGAAAGTAGACCAGatagctgtttgttttgtgatggCAGCCTGTTTGCTGTCTATATCCTCCTCGAGGGGAACTGTTATCTTTAAAGGATTGTTGCGGCACAGCATTCCATTCCAGGACTTCTCATCACAGGCTTCAAACCCTGGGAACCAattttataaacttttttttttttttagtctaaTTATTAAATGctcattttaaaagtgaagtGGTTTCAGGTGTTATTCCAGTGTAAGTTAAAAACCCACATAACCTTTTtttatgacatttgcagttatGACAATTGTTTACAAGGACTCTTGAACCCACTGTTGTATCTCTGCCGGTCTCGGGACTCTGTTGCGGCATCCTTTCTTTTGTCATGCCTTCCTTTGCAGATTGGGTGACTGTTACAAAGGGTAAAGTTCACCCTTCTGCATGATTGTCACGAAAGTCCTTTCATGGCCAGAGAGCTGAAAACAGCATGGCGGGCCAGCCAGAGATAAGATAATGTATGTAACTAGGTTTTAGACTAATGCATCATGTTTTATATCAGGGTTATTAGACTCCAGTCCCGGAAGGCCACAGTGTCTGctaggtttccttccaacccagctcttggctccttaattggtctaattaaacaattaactgaattaTTGTAACACTTCTCTTCAGAAGCTGAAATGTTCTttgggttcaatgttttgagtaatcAACAAATTCAAAGACATTGTCTAGTTTGAGATGAGCCTACCCGAGTAAATTATGACATTATGTAATTGGGAGCtccggttggaacaaaaaccaacagacaCTGTTGCCActcaggactggagtctgacacccctgctttaTATAGTAAACCTGACATGATCTGTAAATGAATCACTTGTAGGaaaattctgcattttaatgaatgtgttttgaaactgaaactcGGGTTTGTACAAGGGTTCTTTGTTTTGCATGGTCCTAACTGTGCTAATTGTTTGGGAGACTGGTCTGTATTTTGATATGgtgtttgatcattttaattctAGAACCACTTGTGCTCTTTCAGAACACTAGAGTAGTGatggtttttaaatgcatcctgATAAGTTACACAATATACTGAAAATCAGGTACTGGATAAATGTACTATTGACATTGGGAACAATATACAATGGATCTGAACTGACAGTAAGCCGAATCCAGAGGTATGAGTCTGACATTAGCACAGCACCTTGTGGTGTTAAATTGAAGCgcaacattttttcttcttcttgattTTGTACACTAGGTGGTGTTAGAGGGAATTTGGAGTAGAGAAGCAACAATCTGTatactggaattaaaataataatctttaaaatgttacaactCTGAAGGTCTTCCTGATCTCTTCCACCCAGTGTTTTGTTACTCTGGCTGCATACTGTCATGGGTACAGAAAGCTGTAAGGTGTAAGCCTGACCAGGGGATTTTAAAACTGGGCACCGTATGTGATTGAGGCTAAAAGAGATCCACTTTATACCCATCTGTGTATGTTGGAATGCTTTAAATGGTTCTGTGGTCTGCATGTTCAGTACAGAGAGGTGGGCTATTCCTGTACCCTGTGTCTCACCGTGGACCTCCTTGGATTCCAGGTTTTGATCAgtgccccccctctctcctctgctgTGAAAAGTTAACGGAGTAAGCAGATGGCTCTGTTCTGAGGAGTGTAAGAAACACATAGTATAATATACGGTTTAGTTTATTTCTCTGGTTGTGGTAATGAAGGCAGTATTTTGCTCTCCCACAAAGGTGTAATTTCTATATTCCAGAATTATCCATAATTGAATTTCAATGGAAGTGTACTGTTCTACagatgtttataaatgtgttgcttttttttcaaattattttttaaactgatgtaATTTTTACACAATAAAGGGAATTCTGC

Function

GO:

id name namespace
GO:0006814 sodium ion transport biological_process
GO:0006865 amino acid transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K14994 SLC38A7_8; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 7/8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78590 lncRNA upstream 427666 17404385 ~ 17503263 (+) True G62781
TU78603 lncRNA upstream 496729 17433642 ~ 17434200 (+) False AMCG00020370
TU78471 lncRNA upstream 884779 17030193 ~ 17046150 (+) True G62681
TU78470 lncRNA upstream 895431 17031817 ~ 17035498 (+) True G62680
TU78429 lncRNA upstream 941350 16987319 ~ 16989579 (+) True G62654
TU78749 lncRNA downstream 12487 17954323 ~ 17955274 (+) True G62909
TU78758 lncRNA downstream 39197 17981033 ~ 17983521 (+) True G62912
TU78763 lncRNA downstream 46012 17987848 ~ 18032139 (+) True G62916
TU78838 lncRNA downstream 193157 18134993 ~ 18138267 (+) True G62975
TU78859 lncRNA downstream 255743 18197579 ~ 18200101 (+) False G62989
AMCG00020393 mRNA upstream 4513 17917969 ~ 17926416 (+) True AMCG00020393
AMCG00020399 mRNA upstream 18789 17905597 ~ 17912140 (+) True AMCG00020399
AMCG00020387 mRNA upstream 42142 17872823 ~ 17888787 (+) True AMCG00020387
AMCG00020388 mRNA upstream 82579 17837383 ~ 17848350 (+) True AMCG00020388
AMCG00020386 mRNA upstream 99863 17824817 ~ 17831066 (+) True AMCG00020386
AMCG00020396 mRNA downstream 3322 17945158 ~ 17950059 (+) True AMCG00020396
AMCG00020395 mRNA downstream 14872 17956708 ~ 17980551 (+) True AMCG00020395
AMCG00020408 mRNA downstream 118289 18060125 ~ 18065789 (+) False AMCG00020408
AMCG00020407 mRNA downstream 128784 18070620 ~ 18072051 (+) False AMCG00020407
AMCG00020406 mRNA downstream 177877 18119713 ~ 18134812 (+) True AMCG00020406
TU78735 other upstream 2025 17928328 ~ 17928904 (+) True G62895
TU78611 other upstream 459060 17459160 ~ 17471869 (+) True AMCG00020371
TU78405 other upstream 1115072 16814374 ~ 16815857 (+) True G62632
TU77751 other upstream 3461629 14467800 ~ 14469300 (+) True AMCG00020281
TU77582 other upstream 3979882 13948426 ~ 13951047 (+) True AMCG00020267
TU78775 other downstream 116722 18058558 ~ 18061864 (+) True AMCG00020408
TU78779 other downstream 125951 18067787 ~ 18072043 (+) True AMCG00020407
TU78921 other downstream 390733 18332569 ~ 18334032 (+) True G63045
TU79166 other downstream 1655402 19597238 ~ 19600737 (+) False AMCG00020439
TU79182 other downstream 1689489 19631325 ~ 19636221 (+) True AMCG00020438

Expression Profile