RNA id: AMCG00020399


Basic Information

Item Value
RNA id AMCG00020399
length 2985
RNA type mRNA
GC content 0.57
exon number 6
gene id AMCG00020399
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17905597 ~ 17912140 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGTCCCAGGGAGCACCTGGAGCCAGCCCTGGTGCTGCAGTGGCTGGGAAGTGCACTGAAGAAGGCCTGGggccaaagaaaaacattgaaagtTACCTTTGGGGGGGCGGAGTGTCCCTGCAGGCTGCAACTGGAGAATCCTTCAGGCCAGAGGCTGTATGTAAACCTGGTGCCCGCAGTGAGAGTGGAGGGCACCAATGCTTTCCTGGTCACCCAGGGACCCGTGCTGCGGCCTCCAGAGCACTGGGTCCAGTGGTTCAGCGTGGACGAGGGCAACTTCCTGCGGGACGTGACTCAGAAGATGCCAAGTAATTCCTGCCacctaaaatgtttgcacatgCTGTCCGTCGCCAACACCAAGCCAGCGTCTCTCAGCCCAGAGGACCCTGTGTCCTCCTTCCTGACCTCCTACCATCTGAAGACAATCCTGATGTACATGCTGCTCAGATGGCCTGATCCGCGGGACTGGACGCAGAGGCAGCTATCTAGGCAGCTCCAAATCGCCCTTGGTGTGCTAGCGAAACACCTGGAGTGCAAGTGGCTCCCCCACTGTGTGCAGGGGTCCCGGGACCTGGGCTCGCTCCAGGGGATGCCCCCCGTGTTCCCCCACACCTCGTCCGTCAACCTCTTCGAGCCACTGAATCAGGACCCCCATCTGCACATGGTGGCAATGAAAGACTTCCGGCGGCTAACAGCACGGCTCAGGATGTGGAGAAGGTGGAAGAGGGAGCCAAAGGCCAAGCCAGAGGAAGAGTCAGTGGCCGAGTTAGAGGCTGATACAGAGGTCGAGCCAGAGGAGGAGTCAGAGGAAGAGTCAGTGGCCGAGCCAGAGGTCGAGCCAGAGGAGGAGCCAGAGGAGGGGTCAGAGGAGGAGTCAGTAGCCGACCCAGAGGAAAAGTCAGTGACCGACCCAGAGGAAAAGTCAGTGGCCAACCCAGACGTCGAGCCAGAGGCTGAGCCAGAGGAGGAGTCAGAGGAAGAGTCAGTAGCCGAACCAGAGAAAGAGTCAGAGGCTGGGCCAGAGAAAGAGTCAGAGGCTGGGCCAGAGGCCAACCCACAGGAAGAGTCAGTGTCAAATCCAGAGGTTTGGACCAAGAAGCAGCTGATAGCCAAGCTTAAAGTAATCTCAAAAGGTGGTGTTgctggagacagagacagagacatttgttttgtcCAAGAGGTGGTGGAACATCTCCTGGATGTGGCACGGGACTCCAGCCAGCTGTGCACCGACATGCTGCAGGAAGGCTGTGTGGGTGTGGGCAGCCAGTTTGAGGGCGGTTGGAGCAGCGGAAGACAGCAGGAGCCTGATTTTGATATGTTGGTGGTCATCAACCCGCCCCGCACTCTCTCCTTCCAGGGTGTGCCACCCAGGCCTCATGAGCTGAAGAGCAGCCCAGACTGGATGGGCCCCGAGGAGCACCTGGAGCCAGCCCTGGTGCTGCAGTGGCTGGGAAGTGCACTGACGAAGGCCTGGGGTCAAAGAAAGACATTGAAAGTTACCTTTGGGGGGGCGGAGTGTCCCTGCAGGCTGCAACTGGAGAATCCTTCAGGCCAGAGGATGTATATAAACCTGGTGCCCGCAGTGAGAGTGGAGGGCACAAATGCTTTCCTGGTCACCCAGCGACCCGTGCTGCGGCCTCCAGAGCACTGGGTCCAGTGGTTCAGCGTGGACGAGGGCAACTTCCTGCGGGATGTGACTCAGAAGATGCCAAGTAATTCCTGCCACCTAAAATGTCTGCACATGCTCTCCGTCGCCAACACCAAGCCAGCGTCTCTCAGCCCAGAGGACCCTGTGTCCTCCTTCCTGACCTCCTACCATCTGAAGACGATCCTGATGTACATGCTGCTCAAATGGCCTGATCCGCGGGACTGGACGCAGAGGCAGCTATCTAGGCAGCTCCAAATCGCCCTTGGTGTGCTAGAGAAACACCTGCAGTGCAAGTGGCTCCCCCACTGTGTGCAGGGGTCCCGGGACCTGGGCTCGCTCCAGGGGATGCCCCCCGTGTTCCCCCACACCTCGTCCGTCAACCTCTTCGAGCCACTGAATCAGGACCCCCATCTGCACATGGTGGCAATGAAAGACTTCCGGCGGCTAACAGCACGGCTCAGGATGTTCACACGCAGTTTCTGTGAAAAGACCAGACGCAGGAACAGCGAAATCGCAGAGAACAGGCTGAATGAATGGCCGCTTACTGCACAACAGCACTATGCCATCTACAAACGGCAAAGCTGGCCGGGGTTCAGCTTGCTTCGCACATGCGCTCTGTGTCGCATCAGCTCCCATCATGCACACCTGCTCTTCGGCTGGCTGGAAAGCTGCCATTCCCGCTACTTGTCTCTTGTGCCAGTGTACTATGTCACATCACCTCAGAAGGACGATAGGTATAAGGGTCCACCCCCCACTCCACCCGGATACAACGGACTCTCCTTAGTGGATGTAAAGGAAGGAGGACCCCGCCACCCACACTTAAAACCTCCACAGTATAGCGTGGCAGTGCAGaggtcaaagttgatgaaggcCCCCTGTGCCATTGCTTGCCAGCCCAAAGCTGTAATGCGTACAAAGAGACTAGCTCAGTGCCAGATGCAAACCCGACAAGACCTTGACCCTAGACTAGGAAGTGTTATTCTGCAGGGCCAACAGGATAGTGAGGATGATGTGTACTATGTCACATCACTTCAGAAGGACGATAGGTATAAGGGTCCACCCCCCACTCCACCTGGATACCAGGGACTCTCCTTAGTGGATGTAAAGGAAGGAGGACCCCGCCACCCACACTTAAAACCTCCACAGTATAGCATGGCAGTGCAGaggtcaaagttgatgaaggcCCCCTGTGCCATTGCTTGCCAGCCCGAAGGTGTAATGCGTACGAAGAGACTAGCTCAGTGCCAGATGCAAACCCGACAAGACCTTGACCCTAGACTAGGAAGTGTTATTCTGCAGGGCCAACAGGATAGTGAGGATGATGGCAAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78590 lncRNA upstream 402334 17404385 ~ 17503263 (+) True G62781
TU78603 lncRNA upstream 471397 17433642 ~ 17434200 (+) False AMCG00020370
TU78471 lncRNA upstream 859447 17030193 ~ 17046150 (+) True G62681
TU78470 lncRNA upstream 870099 17031817 ~ 17035498 (+) True G62680
TU78429 lncRNA upstream 916018 16987319 ~ 16989579 (+) True G62654
TU78749 lncRNA downstream 42183 17954323 ~ 17955274 (+) True G62909
TU78758 lncRNA downstream 68893 17981033 ~ 17983521 (+) True G62912
TU78763 lncRNA downstream 75708 17987848 ~ 18032139 (+) True G62916
TU78838 lncRNA downstream 222853 18134993 ~ 18138267 (+) True G62975
TU78859 lncRNA downstream 285439 18197579 ~ 18200101 (+) False G62989
AMCG00020387 mRNA upstream 16810 17872823 ~ 17888787 (+) True AMCG00020387
AMCG00020388 mRNA upstream 57247 17837383 ~ 17848350 (+) True AMCG00020388
AMCG00020386 mRNA upstream 74531 17824817 ~ 17831066 (+) True AMCG00020386
AMCG00020384 mRNA upstream 295514 17597133 ~ 17610083 (+) True AMCG00020384
AMCG00020383 mRNA upstream 314289 17586137 ~ 17591308 (+) True AMCG00020383
AMCG00020393 mRNA downstream 5829 17917969 ~ 17926416 (+) True AMCG00020393
AMCG00020394 mRNA downstream 18789 17930929 ~ 17941836 (+) True AMCG00020394
AMCG00020396 mRNA downstream 33018 17945158 ~ 17950059 (+) True AMCG00020396
AMCG00020395 mRNA downstream 44568 17956708 ~ 17980551 (+) True AMCG00020395
AMCG00020408 mRNA downstream 147985 18060125 ~ 18065789 (+) False AMCG00020408
TU78611 other upstream 433728 17459160 ~ 17471869 (+) True AMCG00020371
TU78405 other upstream 1089740 16814374 ~ 16815857 (+) True G62632
TU77751 other upstream 3436297 14467800 ~ 14469300 (+) True AMCG00020281
TU77582 other upstream 3954550 13948426 ~ 13951047 (+) True AMCG00020267
TU77503 other upstream 4039034 13863477 ~ 13866563 (+) True AMCG00020255
TU78735 other downstream 16188 17928328 ~ 17928904 (+) True G62895
TU78775 other downstream 146418 18058558 ~ 18061864 (+) True AMCG00020408
TU78779 other downstream 155647 18067787 ~ 18072043 (+) True AMCG00020407
TU78921 other downstream 420429 18332569 ~ 18334032 (+) True G63045
TU79166 other downstream 1685098 19597238 ~ 19600737 (+) False AMCG00020439

Expression Profile