Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00020400 |
| length | 1284 |
| RNA type | mRNA |
| GC content | 0.55 |
| exon number | 8 |
| gene id | AMCG00020400 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030127.1 |
| NCBI id | CM030127.1 |
| chromosome length | 42978078 |
| location | 17981395 ~ 17984641 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0032088 | negative regulation of NF-kappaB transcription factor activity | biological_process |
| GO:0050727 | regulation of inflammatory response | biological_process |
| GO:0018026 | peptidyl-lysine monomethylation | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0016279 | protein-lysine N-methyltransferase activity | molecular_function |
| id | description |
|---|---|
| K05302 | SETD6; N-lysine methyltransferase SETD6 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU78802 | lncRNA | downstream | 11704 | 17968233 ~ 17969691 (-) | True | G62951 |
| TU78718 | lncRNA | downstream | 130282 | 17848158 ~ 17851113 (-) | True | G62880 |
| TU78578 | lncRNA | downstream | 610949 | 17364823 ~ 17370446 (-) | True | G62770 |
| TU78515 | lncRNA | downstream | 805560 | 17120154 ~ 17175835 (-) | False | G62715 |
| TU78513 | lncRNA | downstream | 805560 | 17172569 ~ 17175835 (-) | True | G62715 |
| TU78844 | lncRNA | upstream | 152839 | 18137480 ~ 18138298 (-) | True | G62981 |
| TU78888 | lncRNA | upstream | 199367 | 18184008 ~ 18186050 (-) | True | G63015 |
| TU78936 | lncRNA | upstream | 373184 | 18357825 ~ 18358910 (-) | True | G63057 |
| TU78976 | lncRNA | upstream | 412826 | 18397467 ~ 18398731 (-) | True | G63092 |
| TU78982 | lncRNA | upstream | 451884 | 18436525 ~ 18436939 (-) | True | G63096 |
| AMCG00020398 | mRNA | downstream | 25469 | 17950334 ~ 17955926 (-) | True | AMCG00020398 |
| AMCG00020397 | mRNA | downstream | 50805 | 17926512 ~ 17930590 (-) | True | AMCG00020397 |
| AMCG00020389 | mRNA | downstream | 164507 | 17813315 ~ 17816888 (-) | True | AMCG00020389 |
| AMCG00020390 | mRNA | downstream | 170748 | 17805531 ~ 17810647 (-) | True | AMCG00020390 |
| AMCG00020391 | mRNA | downstream | 186896 | 17775984 ~ 17794499 (-) | True | AMCG00020391 |
| AMCG00020403 | mRNA | upstream | 2540 | 17987181 ~ 18015862 (-) | True | AMCG00020403 |
| AMCG00020402 | mRNA | upstream | 44732 | 18029373 ~ 18039986 (-) | True | AMCG00020402 |
| AMCG00020401 | mRNA | upstream | 66192 | 18050833 ~ 18055929 (-) | True | AMCG00020401 |
| AMCG00020404 | mRNA | upstream | 86655 | 18071296 ~ 18079151 (-) | True | AMCG00020404 |
| AMCG00020411 | mRNA | upstream | 104458 | 18089099 ~ 18092504 (-) | True | AMCG00020411 |
| TU78680 | other | downstream | 355206 | 17610664 ~ 17626189 (-) | True | G62853 |
| TU78391 | other | downstream | 1188228 | 16792866 ~ 16793167 (-) | True | G62618 |
| TU78161 | other | downstream | 1705822 | 16272451 ~ 16275573 (-) | True | G62421 |
| TU78153 | other | downstream | 1726276 | 16252788 ~ 16255119 (-) | True | G62415 |
| TU78145 | other | downstream | 1861242 | 16118989 ~ 16120153 (-) | True | G62409 |
| TU78823 | other | upstream | 9903 | 17994544 ~ 17997017 (-) | False | AMCG00020403 |
| TU78814 | other | upstream | 21527 | 18006168 ~ 18015860 (-) | True | G62961 |
| TU78822 | other | upstream | 52401 | 18037042 ~ 18039960 (-) | False | G62961 |
| TU79413 | other | upstream | 3327561 | 21312202 ~ 21312605 (-) | True | G63464 |
| TU79676 | other | upstream | 4559201 | 22543842 ~ 22544689 (-) | True | G63679 |
