RNA id: AMCG00020401



Basic Information


Item Value
RNA id AMCG00020401
length 1349
RNA type mRNA
GC content 0.46
exon number 8
gene id AMCG00020401
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 18050833 ~ 18055929 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AGGCCCAAGAATTTTCCACCTGGTCCTCAACCTTTTCCGATATTTGGGAATCTGTTGCAGCTAAACCTGAAGAACCCCATAAAAGACTTTGAAAAGCTCTCCAAGCGCTATGTGAAAGTGTACAGCATGTTACTGTATGGTTTGCAGGCAATGAAGGAAGCCTTGATGACTCGGGGAGTTGAATTTGCTGGGAGGCCCCAGGGCCTGCTGATCAATCATGCTAGTGAGAATAAAGGTATACTTGTACTCAACTATGGCCCCACATGGAAGGAGCAGCAGCGGTTCGCGCTGAGCACCCTGAGGGACTTCGGCCTGGGAAAGCTGACAGCCTTGGATTCTCAAACATTGTTCCAAAATGCCATCTCCAATGTCATCTGTGCCATCCTGTTTGGATCCCGCTACAACTATGAGGATCAGCCCTTCAAGTCCCTGATGcgaataaaaactgaaaacacaaaaattaaTAATGGACCCTGGGGCATGATTTACAATACCATACCCCTAATTAGGAGCTTGCCTCTGCCCTTCCGGAAATACtttgaaaacagaagaaagatgAAGGCATTTTTACTGACGAAGGTGGCTGAGAACAAGGAGACATGGGTCCCAGGACAGCCACAGGACATTCTTGACTGCTACCTCGATGAAATTGAAAAGAGAGGTAATGACGGCTCCTCCTTTGATGATGGTTTCATGGTGGCCCTCTTGTTGGATCTCTTTCTTGGTGGAACAGACACCACCTCCACTACTCTCCGTGTGGGCCTCTTGCAACTCATGATGCATCCAGATGTGCAAGGCCCGCGGATGTGTCTGGGTGAGGAGCTGGCATGCATGGAGCTCTTTTTGTTCTTGGTGACGCTGCTGCGCTGCTTCCTGTTCCACTGGCCCCAGGACGGCGCGGAGCCCAACCTCACACCTCACTTTGGAATCGTCCAGGGACCCAAACCCTACCGACTGGGAGTGAGGCTCAGGGGACAGCAGTCTGGGTGAAGCCCCACAGCTGTACAGCATCTCCATTCAGAGATGCACCCCTGACACCACACTTCCAGCAGGCTCAAACAGTAGTTCCTTACAAATCTTATAGCATTTAGTGCTTTGAAATTACTTTTCTCTGTATTGCCTTACACTAGAAATAAGACAAATCAAatatcagaaatgtttttaaCACTACATTGATTAGCTGTACTTTGGACTGTTTAACACTGATCTGATTTAAGATTTTACCTGTATACATATTTAGATATTGACATGAACTGAGCCTTGggttatttttggtttctttatcatacaaatgtttattaaagttTACATGTCTTTCACACTTAGGTTTCCTAATTTCAATAAACctt

Function


GO:

id name namespace
GO:0005488 binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU78802 lncRNA downstream 81142 17968233 ~ 17969691 (-) True G62951
TU78718 lncRNA downstream 199720 17848158 ~ 17851113 (-) True G62880
TU78578 lncRNA downstream 680387 17364823 ~ 17370446 (-) True G62770
TU78515 lncRNA downstream 874998 17120154 ~ 17175835 (-) False G62715
TU78844 lncRNA upstream 81551 18137480 ~ 18138298 (-) True G62981
TU78888 lncRNA upstream 128079 18184008 ~ 18186050 (-) True G63015
TU78936 lncRNA upstream 301896 18357825 ~ 18358910 (-) True G63057
TU78976 lncRNA upstream 341538 18397467 ~ 18398731 (-) True G63092
TU78982 lncRNA upstream 380596 18436525 ~ 18436939 (-) True G63096
AMCG00020402 mRNA downstream 10847 18029373 ~ 18039986 (-) True AMCG00020402
AMCG00020403 mRNA downstream 34971 17987181 ~ 18015862 (-) True AMCG00020403
AMCG00020400 mRNA downstream 66192 17981395 ~ 17984641 (-) True AMCG00020400
AMCG00020398 mRNA downstream 94907 17950334 ~ 17955926 (-) True AMCG00020398
AMCG00020397 mRNA downstream 120243 17926512 ~ 17930590 (-) True AMCG00020397
AMCG00020404 mRNA upstream 15367 18071296 ~ 18079151 (-) True AMCG00020404
AMCG00020411 mRNA upstream 33170 18089099 ~ 18092504 (-) True AMCG00020411
AMCG00020410 mRNA upstream 48259 18104188 ~ 18110182 (-) True AMCG00020410
AMCG00020409 mRNA upstream 115691 18171620 ~ 18175979 (-) True AMCG00020409
AMCG00020414 mRNA upstream 139811 18195740 ~ 18225630 (-) True AMCG00020414
TU78822 other downstream 10873 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 34973 18006168 ~ 18015860 (-) True G62961
TU78823 other downstream 53816 17994544 ~ 17997017 (-) False AMCG00020403
TU78680 other downstream 424644 17610664 ~ 17626189 (-) True G62853
TU78391 other downstream 1257666 16792866 ~ 16793167 (-) True G62618
TU79413 other upstream 3256273 21312202 ~ 21312605 (-) True G63464
TU79676 other upstream 4487913 22543842 ~ 22544689 (-) True G63679
TU79847 other upstream 5098763 23154692 ~ 23161900 (-) True G63819
TU80215 other upstream 6620818 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 7055181 25111110 ~ 25112551 (-) True AMCG00020581

Expression Profile