RNA id: AMCG00020402


Basic Information

Item Value
RNA id AMCG00020402
length 1239
RNA type mRNA
GC content 0.49
exon number 5
gene id AMCG00020402
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 18029373 ~ 18039986 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttttgtgcctaACAACCAATGAACAACAGTGAAGGAGGAGTCAGTGCTCCCTATATACAGGCTTGTGGAGTGCAGTGCAATAACAAACACAGGCACAATGCTGGGCTCTCTGTTTCTCCTGTGGGCTGGGCTTCTCCTCCTCTATTTCCTGTGGAAGACACGGAGGCCCAAGAATTTTCCACCTGGTCCTCAGCCTTTTCCGATATTTGGGAATCAGCTTCAGCTAAACCTGAAGAACCCCATGAAAGACTTTGAAAAGCTGTCCGAGCGCTATGGGaaagtgtacagtgtgtatttCGGGGGCAGGCCGGCTGTGTTACTGCATGGTTTGCAGGCAGTGAAGGAAGCCCTGATGACTCGGGGAGTTGAATTTGCTGGGAGGCCCCAGGGCCTGCTGGTCAACCACATTTACAATACCTTACCGCTAATTAGGAGCTTGCCTCTACCCTTCCGGAAAGCCTTTGAAAACTTTGATAATCTGAAGGAATTTTTCCTAAACAAAGCGGCTGAGCACAAGGAGACACGGGTCCCAGGACAGCCACGGGACATCATTGACTGCTATCTCAATGAAATTGAGAAGAGAGGTAATGACGGTTCTTCCTTTGATGAAGGCTTCATGGGGGCCCACTTGATCGATCTCTTTGTTGCTGGAACAGACACCGGCTCAACTACTCTCCGCGTGGGCCTTTTGCAGCTCATGTTGCATCCAGATGTGCAAGGCCCGCGGATGTGTCTGGGTGAGGGGCTGGCGCGCATGGAGCTCTTCTTGTTCTTGGTGATGCTGCTGCGCCGCTTCCAGTTCCACTGGCCCCAGGACGGCGGGGAGCCTGACCTCACACCTCACTTTGGAATGGTCCAGGAACCCAAACCCTACCGACTGGGAGTGAGGCTCAGGGGACAGCAGTCTGGGTGAAGCCCCACAACTGTACGGCATCTCCATTCAGAGATGCACCCCTGACACCACACTGCCAGCAGGGTCAACAGTAGTTCCTTGCAAATCTTACAGCATTTAGTGCTTTGAAATGACTTTTCTCTGTATTGCCTTACACTAGAAATAAGACAAATCAATATATCACAAATGTGTGAGTGTTGCAAATTTAAGGCGACTTACAGCATAAATAGTGCATAAATAGTACAATTGTCTGTCCTCatttcaataaacctttatataCAAAACGATGGGTTTTGAGTCTTTGATTTCTTTAAACTCAAAGTGAACCAGTCATACATTTGGGG

Function

GO:

id name namespace
GO:0008146 sulfotransferase activity molecular_function
GO:0016782 transferase activity, transferring sulfur-containing groups molecular_function

KEGG:

id description
ko00830 Retinol metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78802 lncRNA downstream 59682 17968233 ~ 17969691 (-) True G62951
TU78718 lncRNA downstream 178260 17848158 ~ 17851113 (-) True G62880
TU78578 lncRNA downstream 658927 17364823 ~ 17370446 (-) True G62770
TU78515 lncRNA downstream 853538 17120154 ~ 17175835 (-) False G62715
TU78844 lncRNA upstream 97494 18137480 ~ 18138298 (-) True G62981
TU78888 lncRNA upstream 144022 18184008 ~ 18186050 (-) True G63015
TU78936 lncRNA upstream 317839 18357825 ~ 18358910 (-) True G63057
TU78976 lncRNA upstream 357481 18397467 ~ 18398731 (-) True G63092
TU78982 lncRNA upstream 396539 18436525 ~ 18436939 (-) True G63096
AMCG00020403 mRNA downstream 13511 17987181 ~ 18015862 (-) True AMCG00020403
AMCG00020400 mRNA downstream 44732 17981395 ~ 17984641 (-) True AMCG00020400
AMCG00020398 mRNA downstream 73447 17950334 ~ 17955926 (-) True AMCG00020398
AMCG00020397 mRNA downstream 98783 17926512 ~ 17930590 (-) True AMCG00020397
AMCG00020389 mRNA downstream 212485 17813315 ~ 17816888 (-) True AMCG00020389
AMCG00020401 mRNA upstream 10847 18050833 ~ 18055929 (-) True AMCG00020401
AMCG00020404 mRNA upstream 31310 18071296 ~ 18079151 (-) True AMCG00020404
AMCG00020411 mRNA upstream 49113 18089099 ~ 18092504 (-) True AMCG00020411
AMCG00020410 mRNA upstream 64202 18104188 ~ 18110182 (-) True AMCG00020410
AMCG00020409 mRNA upstream 131634 18171620 ~ 18175979 (-) True AMCG00020409
TU78814 other downstream 13513 18006168 ~ 18015860 (-) True G62961
TU78823 other downstream 32356 17994544 ~ 17997017 (-) False AMCG00020403
TU78680 other downstream 403184 17610664 ~ 17626189 (-) True G62853
TU78391 other downstream 1236206 16792866 ~ 16793167 (-) True G62618
TU78161 other downstream 1753800 16272451 ~ 16275573 (-) True G62421
TU79413 other upstream 3272216 21312202 ~ 21312605 (-) True G63464
TU79676 other upstream 4503856 22543842 ~ 22544689 (-) True G63679
TU79847 other upstream 5114706 23154692 ~ 23161900 (-) True G63819
TU80215 other upstream 6636761 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 7071124 25111110 ~ 25112551 (-) True AMCG00020581

Expression Profile