RNA id: AMCG00020403


Basic Information

Item Value
RNA id AMCG00020403
length 1587
RNA type mRNA
GC content 0.51
exon number 11
gene id AMCG00020403
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17987181 ~ 18015862 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgttgGGATTGCTGTTTCTCCTGTGTGCTGGACTTCTCCTCCTCTATTTCCTGTGGAAGACACGGAGGCCCAAGAATTTTCCACCTGGTCCTCAACCTTTTCCAATATTTGGGAATCTGCTGCAGCTAAACCTGAAGAATCCCTTGAAAGACTTTGATAAGCTGTCCGAGCACTATGGGAAAGTGTACAGCATTTATTTCGGGAGCAGGCCGGCTGTGTTACTGCATGGTTTGCAGGCAGTGAAGGAAGCCCTGATGATTCGGGGAGTTCAATTTGCTGGGAGGCCCCAGGGCCTGCTGATCAACCACTTTCTCGAGGATAAAGtaatttacattacattgaTGATGTCACAGATGTGCTCAACCCTGCATTTTCAGAATATGACTGCCTCCTTGTGGGCAGGCTGCCTCATTGCACGTGTGATTATAGTcaactatggtcccagctggaAGGAGCAGCGGCGGTTCGCTCTGAGCACTCTGAGGAACTTCGGCCTTGGAAAGCTGTCCATGGAGGAGAGGATCCTGGAGGAGACTTCACATCTCAGCTCATACATAGAGAAGAGTGCAGGACAGTCCTTGGACCCTCAAACATTGTTCCACAATGCCTTCTCCAATGTCATCTGTGCCATCCTGTTTGGATCCCGCTACAACTATGAGGACCAGTCTTTCCAGTCCCTGATGCATATGATATCTGAAACCACAAAAATTAATAATGGCCCCTGGGGCATGACACGGAGGCCCAAGAATTTTCCACCTGGTCCTCAGCCTTTTCCGATATTTGGGAATCTGTTGCAGCTAAACCTGAAGAACCCCATGAAAGACTTTGAAAAGCTGTCCGAGCGCTATGGGaaagtgtacagtgtgtatttCGGGGGCAGGCCGGCTGTGTTACTGCATGGTTTGCAGGCAGTGAAGGAAGCCCTGATGACTCGGGGATCCTTGGACCCTGAAACATTGTTCCACAATGCCTTTTCAAATGTTATCTGTGCCATACTGTTTGGATCCCGCTACAACTATGAGGACCAGTCCTTCCAGTCCCTGATGCGAATTATATCTGAAACCACAAAAATTGGTAATGGACCCTGGGGCATGAGAGGTAATGATGGCTCCTCCTTTGATGAAGGCTTCATGATGGTCTTCTTGTTGGATCTCTTTATTGCCGGAACAGACACCAGCTCCACTACTCTCCGCGTGGGCCTCTTGCAGCTCATGATGCATCCAGATGTGCAAGCGCGGTGCCACCAGGAGATTGACACTGTCCTTAGAGGGAATGAGCAGGTTTGCTATGAGGACAGGCATAGGATGCCCTATGTCCAAGCTGTGATCCACGAAACACAGCGCTATGGAAGTGTCGTCCCTCTCAGTGTCTTCCACGCCACCACTCAGGACACACAGGTGCTGGGCTACAGCATTCCAAAGGGGCTGGCACGCATGGAGCTCTTCTTGTTCTTGGTGACGCTGCTGCGCCGCTTCCAGTTCCACTGGCCCCAGGACGGCGGGGAGCCCGACCTCACACCTCACTACGGAATCGTCCAGGGACCCAAACCCTACCGACTGGGAGTGAGGCTCAGAGGACAGCAGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78802 lncRNA downstream 17490 17968233 ~ 17969691 (-) True G62951
TU78718 lncRNA downstream 136068 17848158 ~ 17851113 (-) True G62880
TU78578 lncRNA downstream 616735 17364823 ~ 17370446 (-) True G62770
TU78515 lncRNA downstream 811346 17120154 ~ 17175835 (-) False G62715
TU78844 lncRNA upstream 121618 18137480 ~ 18138298 (-) True G62981
TU78888 lncRNA upstream 168146 18184008 ~ 18186050 (-) True G63015
TU78936 lncRNA upstream 341963 18357825 ~ 18358910 (-) True G63057
TU78976 lncRNA upstream 381605 18397467 ~ 18398731 (-) True G63092
TU78982 lncRNA upstream 420663 18436525 ~ 18436939 (-) True G63096
AMCG00020400 mRNA downstream 2540 17981395 ~ 17984641 (-) True AMCG00020400
AMCG00020398 mRNA downstream 31255 17950334 ~ 17955926 (-) True AMCG00020398
AMCG00020397 mRNA downstream 56591 17926512 ~ 17930590 (-) True AMCG00020397
AMCG00020389 mRNA downstream 170293 17813315 ~ 17816888 (-) True AMCG00020389
AMCG00020390 mRNA downstream 176534 17805531 ~ 17810647 (-) True AMCG00020390
AMCG00020402 mRNA upstream 13511 18029373 ~ 18039986 (-) True AMCG00020402
AMCG00020401 mRNA upstream 34971 18050833 ~ 18055929 (-) True AMCG00020401
AMCG00020404 mRNA upstream 55434 18071296 ~ 18079151 (-) True AMCG00020404
AMCG00020411 mRNA upstream 73237 18089099 ~ 18092504 (-) True AMCG00020411
AMCG00020410 mRNA upstream 88326 18104188 ~ 18110182 (-) True AMCG00020410
TU78680 other downstream 360992 17610664 ~ 17626189 (-) True G62853
TU78391 other downstream 1194014 16792866 ~ 16793167 (-) True G62618
TU78161 other downstream 1711608 16272451 ~ 16275573 (-) True G62421
TU78153 other downstream 1732062 16252788 ~ 16255119 (-) True G62415
TU78145 other downstream 1867028 16118989 ~ 16120153 (-) True G62409
TU78822 other upstream 21180 18037042 ~ 18039960 (-) False G62961
TU79413 other upstream 3296340 21312202 ~ 21312605 (-) True G63464
TU79676 other upstream 4527980 22543842 ~ 22544689 (-) True G63679
TU79847 other upstream 5138830 23154692 ~ 23161900 (-) True G63819
TU80215 other upstream 6660885 24676747 ~ 24677810 (-) False AMCG00020561

Expression Profile