RNA id: TU78823


Basic Information

Item Value
RNA id TU78823
length 951
RNA type TUCP
GC content 0.46
exon number 4
gene id AMCG00020403
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17987181 ~ 18015862 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCTAAGGAAGCACAGACTTTTCCATTGATATAGTTTTAATGTCaactaaatacatttagttATCAAGTAAGTTAAAGATCAAGTCTTGGCTTGTTGACAAGTCAGTGCATAGTTTGGGTAAAGAATTGTATGCTTTGTGTCTACTAACCAATTGAACAACAGTGAAGGAGGAGTCAGTGCTCCCTATATACAGGCTTGTGGAGTGCAGTGCAATAACAAACACAGGCACAATGCTGGGCTCTGTGTTTCTCCTGTGGGCTGGGGTTCTCCTCCTCTATTTCCTGTGGAAGACACGGAGGCCCAAGAATTTTCCACCTGGTCCTCAGCCTTTTCCGATATTTGGGAATCTGTTGCAGCTAAACCTGAAGAACCCCATGAAAGACTTTGAAAAGCTGTCCGAGCGCTATGGGaaagtgtacagtgtgtatttCGGGGGCAGGCCGGCTGTGTTACTGCATGGTTTGCAGGCAGTGAAGGAAGCCCTGATGACTCGGGGAGTTGAATTTGCTGGGAGGCCCCAGGGCCTGCTGATCAACCACATTAGCGAGAATAAAGGTGTGATTATAAACAGCTATGGCCCCAGCTGGAAGGAGCAGCGGCGGTTCGCTCTGACCACTCTGAGGAACTTCGGCCTGGGAAAGCTGTCCATGGAGGAGAGGATCCTGGAGGAGACTTCGCATCTCAGCTCGTACATAGAGAAGAGTGCAGGTCAGTCCTTGGACCCTGAAACATTGTTCCACAATGCCTTTTCAAATGTTATCTGTGCCATACTGTTTGGATCCCGCTACAACTATGAGGACCAGTCCTTCCAGTCCCTGATGCGAATTATATCTGAAACCACAAAAATTGGTAATGGACCCTGGGGCATGGTATGTGTGCACTATCATATTcctattttcctgtttattacTGAAagttataaaaaatgtatgatcaTGAGCAACGTAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78802 lncRNA downstream 24853 17968233 ~ 17969691 (-) True G62951
TU78718 lncRNA downstream 143431 17848158 ~ 17851113 (-) True G62880
TU78578 lncRNA downstream 624098 17364823 ~ 17370446 (-) True G62770
TU78515 lncRNA downstream 818709 17120154 ~ 17175835 (-) False G62715
TU78513 lncRNA downstream 818709 17172569 ~ 17175835 (-) True G62715
TU78844 lncRNA upstream 140463 18137480 ~ 18138298 (-) True G62981
TU78888 lncRNA upstream 186991 18184008 ~ 18186050 (-) True G63015
TU78936 lncRNA upstream 360808 18357825 ~ 18358910 (-) True G63057
TU78976 lncRNA upstream 400450 18397467 ~ 18398731 (-) True G63092
TU78982 lncRNA upstream 439508 18436525 ~ 18436939 (-) True G63096
AMCG00020400 mRNA downstream 9903 17981395 ~ 17984641 (-) True AMCG00020400
AMCG00020398 mRNA downstream 38618 17950334 ~ 17955926 (-) True AMCG00020398
AMCG00020397 mRNA downstream 63954 17926512 ~ 17930590 (-) True AMCG00020397
AMCG00020389 mRNA downstream 177656 17813315 ~ 17816888 (-) True AMCG00020389
AMCG00020390 mRNA downstream 183897 17805531 ~ 17810647 (-) True AMCG00020390
AMCG00020402 mRNA upstream 32356 18029373 ~ 18039986 (-) True AMCG00020402
AMCG00020401 mRNA upstream 53816 18050833 ~ 18055929 (-) True AMCG00020401
AMCG00020404 mRNA upstream 74279 18071296 ~ 18079151 (-) True AMCG00020404
AMCG00020411 mRNA upstream 92082 18089099 ~ 18092504 (-) True AMCG00020411
AMCG00020410 mRNA upstream 107171 18104188 ~ 18110182 (-) True AMCG00020410
TU78680 other downstream 368355 17610664 ~ 17626189 (-) True G62853
TU78391 other downstream 1201377 16792866 ~ 16793167 (-) True G62618
TU78161 other downstream 1718971 16272451 ~ 16275573 (-) True G62421
TU78153 other downstream 1739425 16252788 ~ 16255119 (-) True G62415
TU78145 other downstream 1874391 16118989 ~ 16120153 (-) True G62409
TU78814 other upstream 9151 18006168 ~ 18015860 (-) True G62961
TU78822 other upstream 40025 18037042 ~ 18039960 (-) False G62961
TU79413 other upstream 3315185 21312202 ~ 21312605 (-) True G63464
TU79676 other upstream 4546825 22543842 ~ 22544689 (-) True G63679
TU79847 other upstream 5157675 23154692 ~ 23161900 (-) True G63819

Expression Profile