RNA id: AMCG00020404


Basic Information

Item Value
RNA id AMCG00020404
length 237
RNA type mRNA
GC content 0.47
exon number 4
gene id AMCG00020404
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 18071296 ~ 18079151 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCGCCAACATCCTGCGGGGATTGCTAAACCTGAAGAACCCCATGAAAGACTTTGAAAAGTCCTTGGACCCTAAAACGTTGTTCCACAATGCCTTCTCCAATGTCATCTGTGCCACCATGTTTGGATCCCACTACAACTATGAGGACCAGTCCTTCCAGTCCCTGATGCGACTgataactgaaaacacaaacattctTAATGGACCATGGGGCATGATTCTCATGATGGCCTAA

Function

GO:

id name namespace
GO:0005488 binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78802 lncRNA downstream 101605 17968233 ~ 17969691 (-) True G62951
TU78718 lncRNA downstream 220183 17848158 ~ 17851113 (-) True G62880
TU78578 lncRNA downstream 700850 17364823 ~ 17370446 (-) True G62770
TU78515 lncRNA downstream 895461 17120154 ~ 17175835 (-) False G62715
TU78844 lncRNA upstream 58329 18137480 ~ 18138298 (-) True G62981
TU78888 lncRNA upstream 104857 18184008 ~ 18186050 (-) True G63015
TU78936 lncRNA upstream 278674 18357825 ~ 18358910 (-) True G63057
TU78976 lncRNA upstream 318316 18397467 ~ 18398731 (-) True G63092
TU78982 lncRNA upstream 357374 18436525 ~ 18436939 (-) True G63096
AMCG00020401 mRNA downstream 15367 18050833 ~ 18055929 (-) True AMCG00020401
AMCG00020402 mRNA downstream 31310 18029373 ~ 18039986 (-) True AMCG00020402
AMCG00020403 mRNA downstream 55434 17987181 ~ 18015862 (-) True AMCG00020403
AMCG00020400 mRNA downstream 86655 17981395 ~ 17984641 (-) True AMCG00020400
AMCG00020398 mRNA downstream 115370 17950334 ~ 17955926 (-) True AMCG00020398
AMCG00020411 mRNA upstream 9948 18089099 ~ 18092504 (-) True AMCG00020411
AMCG00020410 mRNA upstream 25037 18104188 ~ 18110182 (-) True AMCG00020410
AMCG00020409 mRNA upstream 92469 18171620 ~ 18175979 (-) True AMCG00020409
AMCG00020414 mRNA upstream 116589 18195740 ~ 18225630 (-) True AMCG00020414
AMCG00020417 mRNA upstream 156488 18235639 ~ 18247655 (-) True AMCG00020417
TU78822 other downstream 31336 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 55436 18006168 ~ 18015860 (-) True G62961
TU78823 other downstream 74279 17994544 ~ 17997017 (-) False AMCG00020403
TU78680 other downstream 445107 17610664 ~ 17626189 (-) True G62853
TU78391 other downstream 1278129 16792866 ~ 16793167 (-) True G62618
TU79413 other upstream 3233051 21312202 ~ 21312605 (-) True G63464
TU79676 other upstream 4464691 22543842 ~ 22544689 (-) True G63679
TU79847 other upstream 5075541 23154692 ~ 23161900 (-) True G63819
TU80215 other upstream 6597596 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 7031959 25111110 ~ 25112551 (-) True AMCG00020581

Expression Profile