RNA id: AMCG00020406


Basic Information

Item Value
RNA id AMCG00020406
length 2284
RNA type mRNA
GC content 0.48
exon number 10
gene id AMCG00020406
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 18119713 ~ 18134812 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATAGGGGACGAGAGCGACCCACCAGAGCCGAATCGAGCCGAGCCAGCGGACCCTCCCTGGACAGACCTGGCTGCCATGGCCGAGCCGCTCCAGGCCCAGACCCCGAGCCGACACGAGAAGAGTCTGGGTCTGCTCACCACCAAGTTTGTGACTTTACTGCAAGAGGCCAAGGACGGAGTACTGGATCTCAAAGTAAAATCCAAGAACAGCATCCAGTGGAAGGGGGTGGGCCCCGGCTGCAACACGCGGGAGATCGCAGACAAGCTGATTGACTTGAAGgcagagctggaggagctggaccgGCGGGAGCACGAGCTGGACCAGCAGAAGGTGTGGGTGCAGCAGAGCATCAAGAACATGGAAACATTAGCGTATGTTACCCATGAAGACATCTGCGGCTGCTTCCAAGGAGATACCCTGTTGGCCATTCGGGCTCCATCAGGCACACAGTTAGAGGTGCCAATACCAGAAGGGGACACGGCCAGCTCTCCCCCCGTGGTGCTGCCAGTGCCCCCGCCTGATGACTTGTTCCAGAGCCTGCCCACGTCCAGCACACCTGCCACCCCCAAACGTGCCGCCCAGCCCAGCATCCCCCAGCCCCTGCCCTCCGCTCCCCTTCCCGCGCCCGCCAGTCACAGCATCCTGCCCACCACAGCCTCTGCGCCACCTCCAGCTGTCGCTGCCGTAGAACCTCCCAGCAACACTCCTAGTGCACTTGACCTCGCCCACCCCACAACAGACACAGCAGCCAGTCAGACGTCATCATTGGACACCCAAGCCCTTCAATCTTCTGCATCATTGGACAGCAGTTCCTCTCTTCCGGCCCCTTCTGTTGTCTTTGAACCTATCAAATCAGATCCTTCAGAATTGTTGGATTTCCCTAAAGACTTTCCAGAAATGTTTGACCCCACAAAAGaATGTATTGGTGCAGACCTGCTTGAAGAGCTGATGTCTTCAGAAGTCTTCTCACCACTGCTACGGCTCTCCCCTCCCCCCGGCGACCACGATTACGTCTACAACCTGGACGAAAGTGAAGGCCTCTGTGACCTGTTTGATGTCCCCATCCTTAACCTTTGACCCCTGAACTTTGCCACTGGGCGCTTTGTGAATAGGGactttacagaaacaaatatttttaccctttttttgcgagagagaaaaaaaataagaattttcATCTATTTTTGGATCCTTCTTTGTTATAAGCTGTTTCGAGGACAgtttttatttcgttttttgCCCCCTTTTACAAATTTCCTGGACATGGACAATACCAATTTCATCTGAAAAAGAAgatccctgtgtgtgtgtgtgagcttgCAGTTACAGAAGTGGCTTCAAGGAAGAAACGCATTCTTCTTGGTCCTATAGCTTTAAAAACTGTTGTATCACCCACTTGTGgactttttttgttatatattttttggcagTTTGTTTAAACAGACTACATGGGAAAGTATATTAACTTAAGGAATTTGTATTTAAGTTTTGGACAAGACTTGGCAGCATGGTGAAGAAATCCATCAGAGACACCAGTGTACCACCTGCAGGCTTTAAAGGAAGCTGTGGCTTGTTgcctcttttttgtttgtttgtttgttctccctctttcttgtcaggaataaaatgaaagcagGAAGAATGCATTGGCAGCTGGAACTGAGCCGGTCTAAGAGTCCTTACTCCAGCAGGTGTCGCTGCAGCCCCAGTCTTGTTTTCTGGACACTTACTGAAATGGAGCAGCTGCACGGTGGCATGGTCTCACTGCTGTGACTCAAAACATGCGGCCGTCCAACCCCCATAACTCAGTCCCTCCCCTTCTGTGGATCCAGACTCTAAGCCACAAATAcagtatcttttttttgttttttgttttttttgttttgctttttttaagcTGCATCAGCTTGGGTTGCTTTTCTGTCAGTCTTGCTTTATAGAGATTCTCCCTCTCAGTTAAGGACAGTACTGAACAGGTGTAATTATTCTCACTTTCTCATTAAAACAAGAGACTGCTTTGTGTGTCCTGTGAATATAAAAATGAGAACACTTATAAAGAAATCCTTTTTGGAGAACTGAGAGATTGTTCCTGGCTTTTAGTGAATCCACCAGGCCAGTCAGTAACGTTATGGATGAGGGCCTGCACATGCTTTTATCTGTTTAGTACAAAATAACTTCATTACAGCCACAAGTCATGAACAATATATGTACACACTGTTCGCATCCCCTGTTTGTCAATGTTTCTGTTCTGTGAATAGTAATAATTGATGTATACAAAAATCag

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0044424 obsolete intracellular part cellular_component

KEGG:

id description
K04682 E2F4_5; transcription factor E2F4/5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78763 lncRNA upstream 87574 17987848 ~ 18032139 (+) True G62916
TU78758 lncRNA upstream 136192 17981033 ~ 17983521 (+) True G62912
TU78749 lncRNA upstream 164439 17954323 ~ 17955274 (+) True G62909
TU78590 lncRNA upstream 616450 17404385 ~ 17503263 (+) True G62781
TU78838 lncRNA downstream 181 18134993 ~ 18138267 (+) True G62975
TU78859 lncRNA downstream 62767 18197579 ~ 18200101 (+) False G62989
TU78860 lncRNA downstream 62767 18197579 ~ 18200808 (+) True G62989
TU78861 lncRNA downstream 67032 18201844 ~ 18202070 (+) True G62990
TU78862 lncRNA downstream 70148 18204960 ~ 18205970 (+) True G62991
AMCG00020407 mRNA upstream 47662 18070620 ~ 18072051 (+) False AMCG00020407
AMCG00020408 mRNA upstream 53924 18060125 ~ 18065789 (+) False AMCG00020408
AMCG00020395 mRNA upstream 139162 17956708 ~ 17980551 (+) True AMCG00020395
AMCG00020396 mRNA upstream 169654 17945158 ~ 17950059 (+) True AMCG00020396
AMCG00020394 mRNA upstream 177877 17930929 ~ 17941836 (+) True AMCG00020394
AMCG00020405 mRNA downstream 4075 18138887 ~ 18178120 (+) True AMCG00020405
AMCG00020412 mRNA downstream 47264 18182076 ~ 18186048 (+) True AMCG00020412
AMCG00020413 mRNA downstream 52387 18187199 ~ 18195630 (+) True AMCG00020413
AMCG00020415 mRNA downstream 203625 18338437 ~ 18358845 (+) True AMCG00020415
AMCG00020420 mRNA downstream 247331 18382143 ~ 18389911 (+) True AMCG00020420
TU78779 other upstream 47670 18067787 ~ 18072043 (+) True AMCG00020407
TU78775 other upstream 57849 18058558 ~ 18061864 (+) True AMCG00020408
TU78735 other upstream 190809 17928328 ~ 17928904 (+) True G62895
TU78611 other upstream 647844 17459160 ~ 17471869 (+) True AMCG00020371
TU78405 other upstream 1303856 16814374 ~ 16815857 (+) True G62632
TU78921 other downstream 197757 18332569 ~ 18334032 (+) True G63045
TU79166 other downstream 1462426 19597238 ~ 19600737 (+) False AMCG00020439
TU79182 other downstream 1496513 19631325 ~ 19636221 (+) True AMCG00020438
TU79495 other downstream 4000556 22135368 ~ 22142157 (+) True AMCG00020470
TU79558 other downstream 4224016 22358828 ~ 22372760 (+) False AMCG00020487

Expression Profile