RNA id: AMCG00020407


Basic Information

Item Value
RNA id AMCG00020407
length 462
RNA type mRNA
GC content 0.47
exon number 3
gene id AMCG00020407
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 18067787 ~ 18072051 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTGTTCCACAATGCCTTTTCCAATGTCATCTGTGCCATCCTGTTTGGATCCCGCTACAAATATGAGGACCAGTCCTTCCAGTCCCTGATGCGAATGAtatctgaaaatacaaaaattaataatGGACGCTGGGGCATGATTTACGATACCATACCCCTAATTAGGAGCTTGCCTTTGCCTTTCCgcaaaatgattgaaaacagaaagaagGTGAAAGCGTTTTTGCTGACGAAGGTGGCTGAGCACAAGGAGACACGGGTCCCAGGACAGCCGCGGGACATTCTTGACTGCTACCTCGATGAAATTGAAAAGAGAGGTAATGATGGTTCCTCCTTTGATGACGGCTTCATGGTGGCCCTTATGATGGATCTCTTTTTTGCCGGAACAGACACCAGCTCTACTACTCTCCGCGTGGGCCTCTTGCAGCTCATGTTGCATCCAGATGTGCAAGGTCAGTAA

Function

GO:

id name namespace
GO:0005488 binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78763 lncRNA upstream 38481 17987848 ~ 18032139 (+) True G62916
TU78758 lncRNA upstream 87099 17981033 ~ 17983521 (+) True G62912
TU78749 lncRNA upstream 115346 17954323 ~ 17955274 (+) True G62909
TU78590 lncRNA upstream 567357 17404385 ~ 17503263 (+) True G62781
TU78838 lncRNA downstream 62942 18134993 ~ 18138267 (+) True G62975
TU78859 lncRNA downstream 125528 18197579 ~ 18200101 (+) False G62989
TU78860 lncRNA downstream 125528 18197579 ~ 18200808 (+) True G62989
TU78861 lncRNA downstream 129793 18201844 ~ 18202070 (+) True G62990
TU78862 lncRNA downstream 132909 18204960 ~ 18205970 (+) True G62991
AMCG00020408 mRNA upstream 4831 18060125 ~ 18065789 (+) False AMCG00020408
AMCG00020395 mRNA upstream 90069 17956708 ~ 17980551 (+) True AMCG00020395
AMCG00020396 mRNA upstream 120561 17945158 ~ 17950059 (+) True AMCG00020396
AMCG00020394 mRNA upstream 128784 17930929 ~ 17941836 (+) True AMCG00020394
AMCG00020393 mRNA upstream 144204 17917969 ~ 17926416 (+) True AMCG00020393
AMCG00020406 mRNA downstream 47662 18119713 ~ 18134812 (+) True AMCG00020406
AMCG00020405 mRNA downstream 66836 18138887 ~ 18178120 (+) True AMCG00020405
AMCG00020412 mRNA downstream 110025 18182076 ~ 18186048 (+) True AMCG00020412
AMCG00020413 mRNA downstream 115148 18187199 ~ 18195630 (+) True AMCG00020413
AMCG00020415 mRNA downstream 266386 18338437 ~ 18358845 (+) True AMCG00020415
TU78775 other upstream 8756 18058558 ~ 18061864 (+) True AMCG00020408
TU78735 other upstream 141716 17928328 ~ 17928904 (+) True G62895
TU78611 other upstream 598751 17459160 ~ 17471869 (+) True AMCG00020371
TU78405 other upstream 1254763 16814374 ~ 16815857 (+) True G62632
TU77751 other upstream 3601320 14467800 ~ 14469300 (+) True AMCG00020281
TU78921 other downstream 260518 18332569 ~ 18334032 (+) True G63045
TU79166 other downstream 1525187 19597238 ~ 19600737 (+) False AMCG00020439
TU79182 other downstream 1559274 19631325 ~ 19636221 (+) True AMCG00020438
TU79495 other downstream 4063317 22135368 ~ 22142157 (+) True AMCG00020470
TU79558 other downstream 4286777 22358828 ~ 22372760 (+) False AMCG00020487

Expression Profile