RNA id: TU78775


Basic Information

Item Value
RNA id TU78775
length 2078
RNA type TUCP
GC content 0.42
exon number 2
gene id AMCG00020408
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 18058558 ~ 18065789 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCCACCCCCCCATAATATATATCATGTATACATTAACTTCAAGTCAATATATAGATCACACACAGTACATGTGAATGCATGcatttgttgttgctgctttgttttcagtacaaaaagataaaaaaaatctactgtGTCCATTTGCTTGTATCTCATTGCACTGCTCCTGTTCCCTTGCCTAATGCAGGGCACCACCATCATCCCCAACCTGTCCTCCGTGCTGTATGAGGAGGGCAAGTGGAAGTTTCCACACGAATTCAACCCGTCTAACTTCCtgaaggaggagggggagtTTGTGAAGCCAGAGGCCTTTGTGCCCTTCTCCCTGGGCCCGCGGATGTGTCTGGGTGAGGGACTGGCACGCATGGGGCTCTTCTTGTTCTTGGTGATGCTGCTGCGCCGCTTCCAGTTCCACTGGCCCCAGGACGGCGGGGAGCCTGACCTCACACCTAAGTTCGGAATCACGCAGGAACCCAAACCCTACCAACTGGGAGTGAAGCTCAGGGGACAGCAGTCTGGGTGAAGCCCACAGCTGTACTGCATGTCCATTCAGAGATGCACCCCTGACACCACACTGCCAGCGGGGTCAAAGAGTAGTTCCTTTATAACCTTATAGCATTTAGTGCTATGAAATTACTTTTCTCTGTATTGCTAATACCACTTACAGTataaataagacaaaacaataGATCACAAGTCTGATTTTAGCACTAAAGTGATTAGCTATACTTTGGACTGTTTAACACCGATCTGATTTGGGATTTTAcctgtatatacatttagatatttacattaattgaaTGTTGGGTtatgtttggtttctttttcataCAACTATTGCTGTTCATACTAATTGTACTACTCTTTCACAATTAGGTTTCATGATTTCCACTAGCCATGTTGAGGTGCACCTCAGTGTGGCCATTCAAGTCCAGGACGTTTCCACTATGGCCCAGGTGCACCTCTGACTGTGcccaaactagtttcaggaggcactgTTTTGTACATCGTACTGGATGATTCCCAAACTGGTCTGGGGCACGTTCACAACTAGGCATAAGTAAAACAGACTTTGAAGTGATTCCCACTGTGTCTCTCttatgatttgtgtttgttgtaattGTATATCCATACTATTCACAGGTACAAAACATTCTGAAACAATACACAACTGGCATTCTGCACATGaagttattttttctgttgctgCTGGTGGTTAGGGATATCAAGCAATTTCAGGCATGTCACAAATTATTCTTAGTATTCACAGGTAAAACAGAGActgtgaaacaattcacaatGAGTCTTCTGATCATTCCAGGTGGTTTGGACGTGTGCTGTGGTTGGGGAGATAAAACGAGTTTACCCATGTCAGGCTTAGTGTGTGCCTGTATGTGGAATGttactgtttttcacaaatttctAACAGGATTCACAGGCAAAACACAGACTGTGAAACAATCcacaatttgtcttttttaaataatagtatatGTTAACCTTATATCTGCTGTGCTATTTTTTTCCAATGATTCTGGGAGTTTGGtagcatatacagtgagggaaaaaagtatttgatcccctgctgattttgtacgtttgcccactgacaaagaaatgatcagtctataattttaatggtaggtgtattttaacagtgagagacagaataacaacaacaaaatccagaaaaacgcatttcaaaaaagttatacattgatttgcatgttaatgagggaaataagtatttgatcccctatcaatcagcaagatttctggctctcaggtgtcttttatacaggtaacgagctgagattagcagcactctcttaaagggagtgctcctaatctcagctcgttacctgtataaaagacacctgtccacagaagcaatcaatcaatcacattccaaactctccaccatggccaagaccaaagagctgtccaaggatgtcagggacaagattgtggagctacacaaggctggaatgggctaaaAGACCAttgccaagcagcttggtgagaaaatggcaacagttggtgcgattattcgcaaatggaagaaacacaaaataac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78763 lncRNA upstream 26419 17987848 ~ 18032139 (+) True G62916
TU78758 lncRNA upstream 75037 17981033 ~ 17983521 (+) True G62912
TU78749 lncRNA upstream 103284 17954323 ~ 17955274 (+) True G62909
TU78590 lncRNA upstream 555295 17404385 ~ 17503263 (+) True G62781
TU78603 lncRNA upstream 624358 17433642 ~ 17434200 (+) False AMCG00020370
TU78838 lncRNA downstream 73129 18134993 ~ 18138267 (+) True G62975
TU78859 lncRNA downstream 135715 18197579 ~ 18200101 (+) False G62989
TU78860 lncRNA downstream 135715 18197579 ~ 18200808 (+) True G62989
TU78861 lncRNA downstream 139980 18201844 ~ 18202070 (+) True G62990
TU78862 lncRNA downstream 143096 18204960 ~ 18205970 (+) True G62991
AMCG00020395 mRNA upstream 78007 17956708 ~ 17980551 (+) True AMCG00020395
AMCG00020396 mRNA upstream 108499 17945158 ~ 17950059 (+) True AMCG00020396
AMCG00020394 mRNA upstream 116722 17930929 ~ 17941836 (+) True AMCG00020394
AMCG00020393 mRNA upstream 132142 17917969 ~ 17926416 (+) True AMCG00020393
AMCG00020399 mRNA upstream 146418 17905597 ~ 17912140 (+) True AMCG00020399
AMCG00020407 mRNA downstream 8756 18070620 ~ 18072051 (+) False AMCG00020407
AMCG00020406 mRNA downstream 57849 18119713 ~ 18134812 (+) True AMCG00020406
AMCG00020405 mRNA downstream 77023 18138887 ~ 18178120 (+) True AMCG00020405
AMCG00020412 mRNA downstream 120212 18182076 ~ 18186048 (+) True AMCG00020412
AMCG00020413 mRNA downstream 125335 18187199 ~ 18195630 (+) True AMCG00020413
TU78735 other upstream 129654 17928328 ~ 17928904 (+) True G62895
TU78611 other upstream 586689 17459160 ~ 17471869 (+) True AMCG00020371
TU78405 other upstream 1242701 16814374 ~ 16815857 (+) True G62632
TU77751 other upstream 3589258 14467800 ~ 14469300 (+) True AMCG00020281
TU77582 other upstream 4107511 13948426 ~ 13951047 (+) True AMCG00020267
TU78779 other downstream 5923 18067787 ~ 18072043 (+) True AMCG00020407
TU78921 other downstream 270705 18332569 ~ 18334032 (+) True G63045
TU79166 other downstream 1535374 19597238 ~ 19600737 (+) False AMCG00020439
TU79182 other downstream 1569461 19631325 ~ 19636221 (+) True AMCG00020438
TU79495 other downstream 4073504 22135368 ~ 22142157 (+) True AMCG00020470

Expression Profile