RNA id: AMCG00020413


Basic Information

Item Value
RNA id AMCG00020413
length 2838
RNA type mRNA
GC content 0.51
exon number 18
gene id AMCG00020413
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 18187199 ~ 18195630 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAATAGCACTTTAATTGTTTACTTCTACTAAAAAATCATATTGACCAAAAGAGggaaacaaaatagaaaatctgCTAGGTTTACATATTTATCTTCACCACTTAAATGCTCACCCAAGATGGCAGTAGCCAACACAACTAAGACATCTTGGAAACTACAGGAGATTGTTGCTCACGTCAGCAATGTGTCCTCACTGGTCCTGGGGAAGACGTCTGGCCGGCTGCTGGCCACTGGAGGAGAGGACTGCCGCGTCAACATCTGGGCAGTCAACAAACCCAACTGTATCATGAGTCTGACGGGCCACAATAACCCTGTAGAGAGTATCCAGTTCAACAGCTCTGAGGAGCAGGTGGTGGCTGGATCACAGTCTGGATCCTTAAGAGTTTGGGATCTGGAAGCAGCAAAAATTTTGCGAAACCTATCGGGACACAAGGCCAATATCAGCAGCCTGGATTTCCACCCCTTTGGGGATTATGTGGCTTCAGGATCCATGGACACAAACATCAAGctCTGGGATATCAAAAGGAAGGGATGTGTATTTAGGTATAAGGGTCACACCCAGGCAGTCCGGTGTTTGGCCTTCAGTCCTGATGGGAAGTGGTTGGCTTCAGCCAGTGATGACAGTACAATAAAACTGTGGGACCTGACGGCTGGGAAGATGATCACTGAATTCACGGCACACACAGGCCCTGTGAATATTGTACAGTTCCACCCAAATGAGTATCTGCTGGCATCGGGCAGCTCGGACAGGACCATCAAGCTGTGGGACCTGGAGAAGTTTAAGATCATCGGCTCCACTGAAGGAGAGACCAGCCCAGTCAGGTGCATTGCCTTTAACCCTGATGGCAGCTGCCTATACAGTGGGTCCCAGGACTGTCTGAGGGTCTACGGCTGGGAGCCTGACAGATGCTTTGATACAGTTCCAGTGATGTGGGGCAAAGTGGCAGACATCGCCACCTGTAATAACCAGCTGATTGGAGTCTCATCCAGCCTTACCAACGTCTCCACATATGTTGTGGATTTGACCCGGGTGAAGAAATCGGGCACAGTGATCCACGGTCTGATACAGGATGACAAGCCTCTGGCCGAGCCCCCCTCCAAGGGCACCACAATCCGACGCAACTACGAACGCCCGCTGACGACCTGCAGCAAACAGAGGTATGCTCCCCCCTCCAGAGCGGTGTTCTGTGAAGCTTCCTGTATCTTGAGTGCCCGTTACCGCTCCTGTAACGTGCCTGCCTGTGGTCCCACCAGGGTGAAGCAGAACTCGGACAGTGAGCGCCGCAGCCCTGAAGGAGAGAGGCGCAGCCCCAGCAGTGAGGAGGAGCGTGATGAGAAAGAGTCCACAGCTGAGATCCGCAACCCGGAGGACTACAAAGAGATCTTCCAGCCAAAGAGCGCCATCTCTCGCACTCCCCCAAAGAAGAGCGAGCCCTTCCCAGCACCTCCAGAGGATGAGAATTTCCAGGTGAAGCCCAGTCCAGCACTGGAGATGAAGACCCCAGTTCCAGACAAACACGCGccTGAGGTGCTGAAAATCCCACCCATTGCAGCGTCTACACCTGTAAACCGAGTGGAGCCCAGTGTGATGCCCCCTGCCAGCCGGGCACTGCCAGTGATAAACACTGCACTGCCTGTAGTAAGCGCCGTGCCCAGAGCAGAGCCTGCTGTCATCCTGTCCTCCAGGAACGAACCCATCGGCCTCAATGTAGCCGACTTCCTCCCGCCAGCGAAGAATAACAAGCAGTTGGCTCTGAACGATGATGAAGCCTTATCACAGATTCGCAAAGGTCACGAGACCATGTGCGTGATGCTGACCAGCCGACACAAAAACCTGGAAACTGTCAGGGCTGTGTGGAGCAGCGGGGACATCAAGGCAAGTCCAGTCTGTCTCTGGAGACCTGTAAACCTCCTCTGCTTCCTTCCCATGCAGACTGCCCTGGACTCGGCCGTGTCCATCAATGATCTCTCCATTCTCGTAGACATCCTGAACATCGTCAATCTCAAACCGTCTTTGTGGAAACTGGACCTCTGCACATCCATCCTTCCCCAGAtcgaggagctgctgcagagcaAGTATGAGAGCTATGTCCAGACCGGCTGCACCTCCTTAAAACTCATCCTGAAACGCTTCTGGCCGCTGATTTCAGAGACCCTGACTGCGCCCCCCTCTGTTGGGGTTGATATCACACGAGAGGAGAGgcaTCAGAAGTGTAAGGTATGCTACAAGCAGCTGAAGAATCTGAGTAACGTAGTGAAGAACAAGGCCAGTCAGGTGGGGCGACATGGCAGTGCCTTCAAGGAGCTGCAGCTGCTCATGGCTCCTTTAGACTGACCGCCCTCCAACTCCCTCTCACTGCAGGACTATGAAAGACAATGTTATAGAtaacactgtgctgtgctgtgattgaAGCTTGCACAGTAGAGAAGCACTTATCCCTAATCTGGGCTTTCATCACTGAGCAGGAGAGGTGGCAACTGGATGTCGTGCATTTGCACCTTGGGGTGATGCTGCAGTGCCCATATTGAATATCATCTGGCTTTCCAGTTTGTGCAGGAATGCCATGGTTTAGATTTTGCGAGTTGCAGTTTTCACTTGGCTTCTGAGGGTGCCCCTTGTGTTCCGGTGCCCAGAGAAGGCCTGGCCCTTAGGGATTGCCATGTTGCaggctgttttgtttctccaactttattttaatatttgtttgtttttcatatttttgtgacACTAAGACTgagaaatacaatttgaaaaataaaatattttacgAAGATGACAGAATTCTTGTTGAAAGTATTGTACAAAGCCAGAATGTCTGATGTATGTCAGTGACCGC

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K18643 KATNB1; katanin p80 WD40 repeat-containing subunit B1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78838 lncRNA upstream 48932 18134993 ~ 18138267 (+) True G62975
TU78763 lncRNA upstream 155060 17987848 ~ 18032139 (+) True G62916
TU78758 lncRNA upstream 203678 17981033 ~ 17983521 (+) True G62912
TU78749 lncRNA upstream 231925 17954323 ~ 17955274 (+) True G62909
TU78603 lncRNA upstream 752999 17433642 ~ 17434200 (+) False AMCG00020370
TU78859 lncRNA downstream 1949 18197579 ~ 18200101 (+) False G62989
TU78860 lncRNA downstream 1949 18197579 ~ 18200808 (+) True G62989
TU78861 lncRNA downstream 6214 18201844 ~ 18202070 (+) True G62990
TU78862 lncRNA downstream 9330 18204960 ~ 18205970 (+) True G62991
TU78863 lncRNA downstream 12781 18208411 ~ 18208650 (+) True G62992
AMCG00020412 mRNA upstream 1151 18182076 ~ 18186048 (+) True AMCG00020412
AMCG00020405 mRNA upstream 9079 18138887 ~ 18178120 (+) True AMCG00020405
AMCG00020406 mRNA upstream 52387 18119713 ~ 18134812 (+) True AMCG00020406
AMCG00020407 mRNA upstream 115148 18070620 ~ 18072051 (+) False AMCG00020407
AMCG00020408 mRNA upstream 121410 18060125 ~ 18065789 (+) False AMCG00020408
AMCG00020415 mRNA downstream 142807 18338437 ~ 18358845 (+) True AMCG00020415
AMCG00020420 mRNA downstream 186513 18382143 ~ 18389911 (+) True AMCG00020420
AMCG00020419 mRNA downstream 200227 18395857 ~ 18398731 (+) True AMCG00020419
AMCG00020425 mRNA downstream 314833 18510463 ~ 18522856 (+) True AMCG00020425
AMCG00020426 mRNA downstream 334548 18530178 ~ 18536093 (+) True AMCG00020426
TU78779 other upstream 115156 18067787 ~ 18072043 (+) True AMCG00020407
TU78775 other upstream 125335 18058558 ~ 18061864 (+) True AMCG00020408
TU78735 other upstream 258295 17928328 ~ 17928904 (+) True G62895
TU78611 other upstream 715330 17459160 ~ 17471869 (+) True AMCG00020371
TU78405 other upstream 1371342 16814374 ~ 16815857 (+) True G62632
TU78921 other downstream 136939 18332569 ~ 18334032 (+) True G63045
TU79166 other downstream 1401608 19597238 ~ 19600737 (+) False AMCG00020439
TU79182 other downstream 1435695 19631325 ~ 19636221 (+) True AMCG00020438
TU79495 other downstream 3939738 22135368 ~ 22142157 (+) True AMCG00020470
TU79558 other downstream 4163198 22358828 ~ 22372760 (+) False AMCG00020487

Expression Profile