RNA id: AMCG00020416


Basic Information

Item Value
RNA id AMCG00020416
length 3018
RNA type mRNA
GC content 0.51
exon number 10
gene id AMCG00020416
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 18314671 ~ 18334032 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACAACCCAAGAGCTCACTTGGAGTCGGCAAGCCAACAGCGCGTCTGTCTGCCTGAAAGAGTATTAACATCAGCCCGGGGGAGCTCCAAAAAGCAGCGCACACAAGTGAATACAGTCCTGGAAAATTGAAAGAAAACCTGGATTTTAAcgggcaagaaaaaaaaaacacacaccatcACATTAAATCTTTATAAGCGAGGCTGCAATACAAAGGCAGGCGTCATTATTCTGGCAACCGGGGACGTTGTGAGAGCTTTCTGTTAATGTTGTGGACTCTTCTTTGAATGGACACACGACCGTATCTGCTCAACGCTTCCACCAGTTCTCTAGTTACTGTCATTTCAGCCGTCGTGTTGTGTTGTTTCCCGTTGGCCACCTTTATTATACCGTAGGTACAGTAATTGCTAGGCTAATTTCTTTATTTGCGGCGTGACATTTCTGCAAATGAGTATAATAAAACGAAGCAACTCATTTGTCTCGGGGCAAGAGTGTTGATTGCCTAAAACAGTTGCTAAAttagattattatatatttcttttgtttgttgggGGCTTCTATAATTGTAACGTGGGTCATTGGGAAGGGTGCAATCAACCTGGTGCTTCATTGGTTTTCAGATCAGCACTGGCAGGGAAATTGCCAATAAAGATCTGGCACAACGCGCTGGCTTTTCAGCCCTTCTCCTAGAAAAGCTGGGCTAGGGTACAGCGGCTCACTGGGCTATTTTGGAGCTCTCTCCTGGGACTCATGTAGGACTGGACCTGAATACAGAAACAAGAGGGAGGTCAGGAACAAAAAAGCAAGGGAACAAAAACAGAGATGCCTATACCAGGAGCTCCCAAAAAGGAAAAGTGCATGTTTACAATttgacaaagcaaaacaaacaaacaaacaaacaaacaagaaatccCAGTCTCTGCGCTCGCCAGAAATACTATGAAGACTGATTAGGGGAATGACCTGCAGTTGTAGGCGCTTTTGATTCAGCCCCAGTACAGCGCGCTTTCCTCCAGTGTGTATTTCGGGAAAGGGAACTTAAACCGTGATTTCGTGAATGCAAAAACAAGTCCATCCTTAGCGACACGCACGGAGCACGCACGCACGCAGGCACGCACGCAGCCGGACCCGCACAGCGCCGCAGACCCGCACAGCCAGCGCGCGACGGGATGGGACCCTCGAGGACGTGCGGGACCGCGTCGCCCTGGAAACTGAATCTCGTGCCGTTGCTGGTGGTCCTGGTCTGCAGCGGCGGGGCGTGCGGGGCTGGGGACCACGCGTTCAACTCTGAGTCATGGCTACGGATGTATGGCTACCTCCCTCCAGCCAGCAAATTGATGTCCACGATGAGTGCGATGAAAAAGCCCCGGTGTGGTGTCCCTGACAAATTCGGAGGCCAAATCAAAACGAATGTCCGTAGAAAGCGCTTTGCCCTGACAGGACACAGATGGAATAAAAGTCAACTGACCTTCAGCATCCAGAACTACACCCCGAAGATTGGCGAATACGATTCATACAAGGCAATCCGGAAAGCCTTCCAGGTGTGGCAGAGCGTGACACCGCTGCAATTCGAGGAGATCCCGTACCACGAGGTCAAGTACGGCCGTCGCAAGGAGCCCGACATCATGATCTTTTTTGCCTCCGGTTTCCATGGCGACAGCTCCCCTTTTGATGGCGAGGGGGGATTCCTGGCCCACGCCTACTTCCCAGGACCTGGCATGGGGGGGGACACGCACTTCGACTCAGACGAGCCCTGGACCATCGGCAATGGTGACCTTAGCGGAAATGACCTGTTTCTGGTGGCTGTTCATGAGCTGGGCCACGCACTGGGGCTGGAGCACTCCAACAACCCCATGGCTATCATGGCCCCATTCTACCAGTGGATGGACACAGAGAACTTCCAGCTGCCAGAGGATGACCTCAGAGGGGTCCAGCAGATCTATGATCCAGGCAAACCCCGCACCACTGATCGCCCCGACCACTATGGCCCCAACATCTGCGATGGCAATTTCGACACTGTCACCGTTCTGAGAGGAGAGATGTTTGTCTTTAAGGGGCGCTGGTTTTGGAGGGTCCGTCGTAACCGAGTTCTGGACAACTACCCCATGCCTATTGGACACTTCTGGAGAGGGCTTCCTGGAGACATTGATGCTGCCTATGAAAGGCATGATGGGAAATTTGTCTTTTTCAAAGGAAGCAAGTTCTGGCTGTATCGGGAGGCTAATCTGGAACCAGGCTACCCACAGGAGCTGACAGAGTATGGTCAGGGCATCCCATATGACAAGATAGAGACAGCTATTTGGTGGGAACCTACAGGATACACTTATTTCTTTAATGGAGACAgGTACTGGCGTTTTAATGAGCAATCTCGTGCTGTGGACAAGGACTATCCCAAGCCAAACAGCGTGTGGGGCGGGATCCCTCCCTCTCCCAAGGGGGCTTTCCTGAGTGATGATGGAGCTTATACCTATTTCTACAAAGGAACCAAGTACTGGAAATTTGACAATCAGAGGATGAAGATTGAGCCTGGATATCCCAAATCTATCTTGCGGGACTTCATGGGCTGCCAAGTCAACCTTGACCCAGACCAAGACACCGACAAGGACGTGGGCCGCAAGTGGCCAGAGGTGGACCGTCCACCGTTCGACCCTGATGCAGGGCGAGACGGCACCAACGACGTGGATTACAAGGATGAGGACGTGGACGTTGTGCTTAAAATTGACGAATACACTCGTACCATGAACATCATCATGGTAACCGTGCCTCTGATCCTGGTGCTGTGCATTCTGGGACTGATTTACGCCATCATCAAGATGCAGAGGAAAGGGGCGCCTAAGGTGCTGGTCCACTGCAAACGTTCCCTGCAGGACTGGGTTTGACTTTTCACCTTTGACCCCTTCCCCCTCTCacctcacaaacacacacattacccGACATGTCCCTTCCCATGGTGCTACCAATTAGTTGACTGTAGTCTATTTATATCAGAAagtttgcacatttttttttttttttgtgatt

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008237 metallopeptidase activity molecular_function

KEGG:

id description
K07995 MMP15; matrix metalloproteinase-15 (membrane-inserted)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78888 lncRNA downstream 128621 18184008 ~ 18186050 (-) True G63015
TU78844 lncRNA downstream 176373 18137480 ~ 18138298 (-) True G62981
TU78802 lncRNA downstream 344980 17968233 ~ 17969691 (-) True G62951
TU78718 lncRNA downstream 463558 17848158 ~ 17851113 (-) True G62880
TU78578 lncRNA downstream 944225 17364823 ~ 17370446 (-) True G62770
TU78936 lncRNA upstream 23793 18357825 ~ 18358910 (-) True G63057
TU78976 lncRNA upstream 63435 18397467 ~ 18398731 (-) True G63092
TU78982 lncRNA upstream 102493 18436525 ~ 18436939 (-) True G63096
TU79099 lncRNA upstream 743445 19077477 ~ 19077758 (-) True G63180
TU79184 lncRNA upstream 1300262 19634294 ~ 19636243 (-) True G63257
AMCG00020418 mRNA downstream 23066 18247657 ~ 18291605 (-) True AMCG00020418
AMCG00020417 mRNA downstream 67016 18235639 ~ 18247655 (-) True AMCG00020417
AMCG00020414 mRNA downstream 89041 18195740 ~ 18225630 (-) True AMCG00020414
AMCG00020409 mRNA downstream 138692 18171620 ~ 18175979 (-) True AMCG00020409
AMCG00020410 mRNA downstream 204489 18104188 ~ 18110182 (-) True AMCG00020410
AMCG00020422 mRNA upstream 56774 18390806 ~ 18395296 (-) True AMCG00020422
AMCG00020424 mRNA upstream 64802 18398834 ~ 18415770 (-) True AMCG00020424
AMCG00020421 mRNA upstream 85150 18419182 ~ 18431255 (-) True AMCG00020421
AMCG00020423 mRNA upstream 104172 18438204 ~ 18454657 (-) True AMCG00020423
AMCG00020434 mRNA upstream 540870 18874902 ~ 18901561 (-) True AMCG00020434
TU78822 other downstream 274711 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 298811 18006168 ~ 18015860 (-) True G62961
TU78823 other downstream 317654 17994544 ~ 17997017 (-) False AMCG00020403
TU78680 other downstream 688482 17610664 ~ 17626189 (-) True G62853
TU78391 other downstream 1521504 16792866 ~ 16793167 (-) True G62618
TU79413 other upstream 2978170 21312202 ~ 21312605 (-) True G63464
TU79676 other upstream 4209810 22543842 ~ 22544689 (-) True G63679
TU79847 other upstream 4820660 23154692 ~ 23161900 (-) True G63819
TU80215 other upstream 6342715 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 6777078 25111110 ~ 25112551 (-) True AMCG00020581

Expression Profile