RNA id: AMCG00020418


Basic Information

Item Value
RNA id AMCG00020418
length 2436
RNA type mRNA
GC content 0.58
exon number 23
gene id AMCG00020418
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 18247657 ~ 18291605 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCCGCGCTCCTCTGCTTGGGGGAAACAGCCAAACTTGGAGCACGTTCTGCATTTCCCCTGCCCTGGCGTGCTTCCACTCACCCCTGGCTCGAAAGCAGAAGAAAAGCTGCAGGACGCCCAGAGGAAATCCCCACCTGTTGCCCCACCTGATCCCCTCTGATCTGAGAAGATACCGCAATAACTTGCTTGGAGCCGACCGCACTTCGCCAGCAGCCACCCCCCACGAGTCCCCTGGCTGCTACATAAAGATGTTTAGCTGGGTGGTGAAAGTGGTTCCCCAGCCCCCTGAACCCCCTAAGCCCCTGGGACAGGAAGACCAGGCTGAGCCCACACCCCTTGCTTCAGAGCCAgaaaagaaagtgaaagtgaaagcgAAGGAAAAAGACCTTCCACCAAAGGAAGTGCCCAAGCCAGAGCCCGAAAAGTCAAAAGAGCTTCAAGAGACTGCAGAGGACAACAGtaccCAGTCTGGTGTGTTGACCTGGATCTCTCAGGGTTTTGTCAATGTCCTTCCCAAGCCAGTGGGGACCTCTGGGGATAAGAAGGAGGAGCTGAAAGCAGAAAGCAAGGTGAAGGAGATCGAAACGGCCTCTCAGGCTGCCAGGCAGGGAGGTGGAGTCATCAGCTGGTTTGTGCAGGGACTGGGCAAAGTCGTTCCCCAGCCAGAGGACAAATACAAAGCAGTTGCCCTGGAAGAAGATAACAAAACACAGGTGGGCAAAAAATCTCAAACCGAGATTAAAATAGTGGAGCTGGAATCCGTCAGCTCACAAGAACCCGCCTCCGAAATCGACAACACAGTCCAGAGCCACCCATTGGCCACTCCCAGTAAAGCCAGGGTGATTGAATGGCTGAAACATGGTCTGGAGAAAGTGGTTCCCAAGCCAGCAGAACTCCCTGCCCCTCTCAATACAGCTCCGCAAAACACGAAAgcagagaagaagaaggaagaagCCCCAAAGAAAGAAGTCGTGAAGGAGACTCCTGCTCCTGTTCCTGCTCCTAAAGcaccagcaccagcaccagcaccagcgtCTGCTGAGCCTGTGAGTGCCCGCGAGGAGGCCACCAAACCTGCCAGTATGGTGGGCTGGTTCGTGCAGGGACTGGAGAAGATGGTTCCACAGCCGGTGACAAAACCCAAAGCAGATGGGACAGGGgaGGAAGCAGGTGCATCTGTAGTGCAAGAAAAGCCAGTCGCTGTGGACATGATCTTGGAGGAAGTGGAGTCAGACTGGGAGAATGAGCCAGGGGCCCAGGCTGAGACTCTGGAGATGCTCCCTGCCCCACGGGAGCCCCCTTCCCACCCTCGGCTCCGCGCCGTGCTGCTGGAGGACGCAGAGACCCAGACAGAGCGCTGGACACCCATTCTACACCTGACTCCACCAGAGACAGACGGAGTCAGGCAAGATCCAAAGGCAGTCGAAGAGCCAGTGCAAGAAACAGCGGAGGAGCCACTTGAGGAAGTGACAGAAAACCTGGATGATGGAGAAGAGTTACGATTGATACAGGAAGAAAgtgaggaggcggaggaggaggagaataAGTTCACCGAGTGCCTTGTGGACGTGTGTCCTGCAGGGGGCTTCCCCAGCCCCCCCCCGCCTGAGTCAGTAGAGGAGGAGAAAGCTGCAGCAGGAGAACAGACCCACCCACAGCTGGGACCAGAGGCACGGGTGGAGGGGGATCCAGACGGAGGAGTGCAGAAGACAGGAGAGGTGAGCCCAGATCAAGGGCAGTCAGCAGTCAAAGAGGATTCACCTGTCAGGGTGTCCGAAGCAGCGGAACAACCGTCGCCTGTGGAGGAGGAGCCACAGGAAGTCAAGCAAGAGTCCCCAGTGAAAGAGCCATCCCCTGGCCAGGATCCTGAACCACAACCACagccagaaccagaaccagttCAGGAAGCAGAAGCAGTCAAGGAACTTGTGCCAGTGAGAGAGGAGTCCCCAGTGAAGGAGGTGCAACCCACACCGGCCGAGAAAGGCGTGGCAGCTTGTGAGCCACAGCCTGTCACACAGCAGCCAAAGAGATCAGAGGAGGTGTCGCCCACTGCGTCTGTCAACCAGGAGGAGGAGACTGAAGCGGTTGAAGAAAATTGCGGAGTGAGCTGTGCGCCTCTCAAACGCTGGCTGCTGGGCATCCCCTGGCCTACCGCCCCACAGTGCCTGGCCGACCTGAGTCACGTTGCCGATCGGACCCTCCTGAGCTTGCGGAGCGGCCTCAGCTGCCTCACCAACCCCAGCTGCcacagcaacctcaccttgccCAGCTGTCCCAGCCTGTCTACTTGCCCCCACCTCACCTGCCCCACTCTTCCCAGCTGCTCCCATCTCCGCAGCAAACTCACTTGCTCCACTCTCCCCAGCTGTCCCCACCTCCTCAGCTACCTCAACTGTCCCAGTGCCCTCAACTGTCTGAACCGCCAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78888 lncRNA downstream 61607 18184008 ~ 18186050 (-) True G63015
TU78844 lncRNA downstream 109359 18137480 ~ 18138298 (-) True G62981
TU78802 lncRNA downstream 277966 17968233 ~ 17969691 (-) True G62951
TU78718 lncRNA downstream 396544 17848158 ~ 17851113 (-) True G62880
TU78578 lncRNA downstream 877211 17364823 ~ 17370446 (-) True G62770
TU78936 lncRNA upstream 66220 18357825 ~ 18358910 (-) True G63057
TU78976 lncRNA upstream 105862 18397467 ~ 18398731 (-) True G63092
TU78982 lncRNA upstream 144920 18436525 ~ 18436939 (-) True G63096
TU79099 lncRNA upstream 785872 19077477 ~ 19077758 (-) True G63180
TU79184 lncRNA upstream 1342689 19634294 ~ 19636243 (-) True G63257
AMCG00020417 mRNA downstream 2 18235639 ~ 18247655 (-) True AMCG00020417
AMCG00020414 mRNA downstream 22027 18195740 ~ 18225630 (-) True AMCG00020414
AMCG00020409 mRNA downstream 71678 18171620 ~ 18175979 (-) True AMCG00020409
AMCG00020410 mRNA downstream 137475 18104188 ~ 18110182 (-) True AMCG00020410
AMCG00020411 mRNA downstream 155153 18089099 ~ 18092504 (-) True AMCG00020411
AMCG00020416 mRNA upstream 23066 18314671 ~ 18334032 (-) True AMCG00020416
AMCG00020422 mRNA upstream 99201 18390806 ~ 18395296 (-) True AMCG00020422
AMCG00020424 mRNA upstream 107229 18398834 ~ 18415770 (-) True AMCG00020424
AMCG00020421 mRNA upstream 127577 18419182 ~ 18431255 (-) True AMCG00020421
AMCG00020423 mRNA upstream 146599 18438204 ~ 18454657 (-) True AMCG00020423
TU78822 other downstream 207697 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 231797 18006168 ~ 18015860 (-) True G62961
TU78823 other downstream 250640 17994544 ~ 17997017 (-) False AMCG00020403
TU78680 other downstream 621468 17610664 ~ 17626189 (-) True G62853
TU78391 other downstream 1454490 16792866 ~ 16793167 (-) True G62618
TU79413 other upstream 3020597 21312202 ~ 21312605 (-) True G63464
TU79676 other upstream 4252237 22543842 ~ 22544689 (-) True G63679
TU79847 other upstream 4863087 23154692 ~ 23161900 (-) True G63819
TU80215 other upstream 6385142 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 6819505 25111110 ~ 25112551 (-) True AMCG00020581

Expression Profile