RNA id: AMCG00020421


Basic Information

Item Value
RNA id AMCG00020421
length 2907
RNA type mRNA
GC content 0.50
exon number 12
gene id AMCG00020421
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 18419182 ~ 18431255 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCGCAGAGCCGCAGAGCCCAGCAGCGCGGAGACTGGCAGGCTGACCTCGGGAAACCTGCTTTTCTCCACCCGTCAAGTGCCCTAGATATGAGAATGGCCCAGCCTAGCCCCCTGCCTACAATCCCTGAGCATGATGTAATGAAGATGGTTCTGACTCGCACCAGTGCAGGCTCCTGTCTCAGAGGCAGCTATAGCAGAGCAGGGGGGTGCCAGGTGGCTGTGAAAGTGCTGTCCATCCAAAGAACTGCGGAGAGCCAGTGGAGTGAGAGCCTGAAGGAGATTGCGAAGGTCAGACGGATTCAGTCAGAGAGGGTCCTGGTTCCCCTGGGTGTGTACAGGTCTCATCTGCTCCTAGGCCTGGTGTCAGACTGGATGGACGAGGGCTCTCTTCACTCTCTTCTGTATGAGCGGCAACAGCACCAAGAGGTGCCCTGTACCCTGCTCCTCCGTATCATGCAAGATGTGGCGGAAGGACTGTCCCACCTGCACAGCCTGCTCCTTGCCCATCAGGCCCTAAAGCCTGCCAATGTGCTGCTCGATGCCCAGTACCGTGCCAAGGTGTGTGACTTTGGCCTGTCTCAGTGGAAGAAATGGAACCTAAAGTCTGTCCCTGCTGATTGTAATGGGCTTTGCATTAGGGACCTAGTGTATTTGTCCCCAGAGACCCTTTGTGGGGAGAAACCTTCGACAGAGGGAGATATATACAGTTTTGCCATGCTCTTGTGGGAGACCCTCAACAGAAGACCACCATATGAAGATATCTCTCAGCCTCAGGTTCTGCTGCTGTCGGTGCAGAGTGGTGTGGGACCGGGCATCGGGGAGGAGCTGGTGCCACGTGCCGTAACCCAGGCTCCCGTCCTCTCCCAGCTCATCGTCCACTGCTGGAGCTATGAGCCTCACACGCGCCCTCAGGCATCAGACTGTGTGCTGGCGTTACGGAGAGTCTTGGAGACAGTTGACCCAGACGCAGTGGCCAGGGCTGCTGTCCAGCTGAAGGAGAATAAGGAGAGGGTGCTCTTGTACAGTAAAGAGCAGTTGATTCAGGACCTGCATGTGGAGGTGAACAACCTGGAGCTGTCTGGCTGCTGCTGTGAGTCCAAAAGTGCTGGCACCAAGTCTGTTCGCTTGGAGACGGTGCAGATGTTGACCTCCGTACCAGAAAGACCCAATCCTGCCCGGACCTCTTCCCGAAAACCCAACGGCCCTTCACCCCCCCTGCCAGTTCCCGGTGCCCTCCAGACTGCTTGTAGAATAGACTCCTGGAGCCCACCCTGCGCTTCTCCCCTGCAGCCAGCATGTCGAGTCGCTCGGGTATCACCAAGCAGGCCAAGTAGTTTGAACAGGGGTAATTTGCGGTATagcccacctcctcctccaccctctCCACCCACTGGCACTGCCCGACTGCACCGAAGTGTCTCCTGTGACCAACCCCAGCACTGCTCCTTGGACTCCCTCCCAGGGAAGAGCTGCTGCCAGATCCTGCAGGACTACCGGGAGTCCATCTTGCGAGGGATGACAGAGGGCCGGCTGAACTACATCCTGGATGTGCTGCGCTCCCGACAGGCCCTGACACGGGAGGCCTACGAGCTCATCACCGCCGCCCAGACGCTGGTGGCTCGCACACGCTGCCTGCTGGACACCTGCGTGTGTCTGGGGGAGGGGGCGGCCGGGTTAGTTGCCATGGCCCTCGGTCTGGTGTCCACGAGCGCCCGCCGCAGCCCCTCCCAGCTCTCCTATTGAGGGTACCATTCCCAGTGAGCCTCCGAGGGGAACTACCAGTGGAGAGTCACGTCACCGAGACGGCAGAGCTTGCTACTTTCTGTGCACGGTGGCTGGTGGAGCTGAAAACATGAAGACGGTGGCTGCCGACCGCCAGTAAATTCATATTGGTCTTCAACGTTTTCGTCACAGGGCAGCTTTTCAAACGGATCACCCAATCTGAAGAAGAGTGATTGAGAGGAATAGCTGTGTTAAGGTGGATGCCAGTTGGACCGTTATAGCAGATGTGGGAGTTGTTGTATCCAGTGGGTGTGGATGCAGCCATTTAGCTACCATATGTATGGGTCATGTGGACCCCTGCCTTTCAAATGAGTATTTTATggttataaattaaatactgtattatcaACTCAGATTTTGTAGTTTTCATAAAACtatttgcactgtattgtttattatactCCTGACaggtgtgcatgtgtttgtctcCATCACAATGATATGGAAGTTCTCAGATTCAATGCAGCAGGGCACAGAGTGATGTATGTATACTGTAGCAGTGCTCTGATTTGCTTTTTTGCTGTAGTTAAAGAGCGTGGTGTTTTCCTTGTTAGAGGAAATGGTTATGACCTATTATCATCTGTTTTTTGAAGGAATGTAAGTtattcattttgatttgcattttcacAAAATTGAAATCGTATGTAATCTCTAAAACTGCAGTGTAGCAGGATTGATATTTCATTATTCAAGTTGTAATACATAAGGCATGTGGTTTTTATATTCTGCACCCTTTGTACAGAGGCAGTTCAATGGGATCAACATAGCAGATCAGTAAGTATATTAGCTTTGCATGAGttttgaaaatcttttttttagtGCTGAATGTTGGTATCTTGCATCAAGAACTAAAGTACTGCtgctattttttatattgaaattaatatagAAATCTTTCTTTATTAGTGTGATAACatagtgttttacatttaaaaaactttgTTGTAAGAAAATCTATTATAAAAgtatatactgaaaaatatgtgTTGTCTAGTGTTTTCAATGTAACAAATAGCCAGGATCAAATCCTCCCTCACCACTGACAGGGTTCCCTCTAAAAGTTTAAGACAGATAAACATCTAAAGGTTGAAATCTTGTAtcctatggcaagccaaattatcatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78976 lncRNA downstream 20451 18397467 ~ 18398731 (-) True G63092
TU78936 lncRNA downstream 60272 18357825 ~ 18358910 (-) True G63057
TU78888 lncRNA downstream 233132 18184008 ~ 18186050 (-) True G63015
TU78844 lncRNA downstream 280884 18137480 ~ 18138298 (-) True G62981
TU78802 lncRNA downstream 449491 17968233 ~ 17969691 (-) True G62951
TU78982 lncRNA upstream 5270 18436525 ~ 18436939 (-) True G63096
TU79099 lncRNA upstream 646222 19077477 ~ 19077758 (-) True G63180
TU79184 lncRNA upstream 1203039 19634294 ~ 19636243 (-) True G63257
TU79277 lncRNA upstream 1824667 20255922 ~ 20256399 (-) True G63346
TU79287 lncRNA upstream 1857448 20288703 ~ 20299843 (-) False AMCG00020446
AMCG00020424 mRNA downstream 3412 18398834 ~ 18415770 (-) True AMCG00020424
AMCG00020422 mRNA downstream 23886 18390806 ~ 18395296 (-) True AMCG00020422
AMCG00020416 mRNA downstream 85150 18314671 ~ 18334032 (-) True AMCG00020416
AMCG00020418 mRNA downstream 127577 18247657 ~ 18291605 (-) True AMCG00020418
AMCG00020417 mRNA downstream 171527 18235639 ~ 18247655 (-) True AMCG00020417
AMCG00020423 mRNA upstream 6949 18438204 ~ 18454657 (-) True AMCG00020423
AMCG00020434 mRNA upstream 443647 18874902 ~ 18901561 (-) True AMCG00020434
AMCG00020433 mRNA upstream 477723 18908978 ~ 18915511 (-) True AMCG00020433
AMCG00020437 mRNA upstream 883540 19314795 ~ 19316145 (-) True AMCG00020437
AMCG00020435 mRNA upstream 892140 19323395 ~ 19438437 (-) True AMCG00020435
TU78822 other downstream 379222 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 403322 18006168 ~ 18015860 (-) True G62961
TU78823 other downstream 422165 17994544 ~ 17997017 (-) False AMCG00020403
TU78680 other downstream 792993 17610664 ~ 17626189 (-) True G62853
TU78391 other downstream 1626015 16792866 ~ 16793167 (-) True G62618
TU79413 other upstream 2880947 21312202 ~ 21312605 (-) True G63464
TU79676 other upstream 4112587 22543842 ~ 22544689 (-) True G63679
TU79847 other upstream 4723437 23154692 ~ 23161900 (-) True G63819
TU80215 other upstream 6245492 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 6679855 25111110 ~ 25112551 (-) True AMCG00020581

Expression Profile