RNA id: AMCG00020431


Basic Information

Item Value
RNA id AMCG00020431
length 7665
RNA type mRNA
GC content 0.52
exon number 35
gene id AMCG00020431
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 18783271 ~ 18863273 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGATATGTCAGGCCAGGTCTGCTGTAAGGTATATAAGGCGGGCCTGAgcgagagagaagagagagacaatAGGGGCGAAGGTCTGGATTGGTACCTGACTCGAGTGGAGCTCATTGTGACTGATGTCAATGACAATGCTCCAGAATGGGCCATGGTGCCTGTCCCTTACTTGGCGGTTGTGTCTCTGGAGGCCCTTCCTGCTACAGTTGTCTATAAGCTCCTTGCTCGCGATGGCGATGAGGGCCTGAATGGAGAGGTGGAATACTTCCTGTCAGATGGCGGTGATGGGCGTTTTGATGTGGATAGGAAGAGCGGCCTGATTAAAACAACGGGGCTGCCCCTACAGAAGGACAAGGAGTATCTTCTGAATGTGTTTGCAGCTGACAAGCTGGGAAGCAGGAGTCTGCCGGCCGTGGTGTCCATTGTAGCAGGACCCAGGGCCCCGCAGTTTACCAGTGCCTCTTACTCCATCTCCATCCCAGAGAATACTCCTGAGGGACAGACATTCCTGGCTGCCACGGCCGTGTCCTTCCAGAAACAAGTCCTCAGCTACAGCCTCCTCATCAACCCCAGCAGCCTGTTCAGCATCCAGCAGGACACAGGGGAGATCAGCTTGACTCGCACCATCGACTTTGAGAGTGACCAGCACCGGTACCTCCTGCTCGTGAGAGCCAGCGAGAACCAGGACTCTCTCAGCAGTGCTGCCGAGGTTCTCGTTGTAATTACCGATGAGAATGACTGCGTACCAGAATTCCTGCAGTCTATCTACAGCAAAGACAGTGTCCCTGAGACTGTAACCACAGCAACATCCCTGTTACAAGTTTCCGCTAATGACTGTGACTCCGAGCTGAACGCGGAGCTCTCCTATTACACGCTGAGCCCGGACTTCACCATCTCTGCTCACGGCACCATCTTCCCAGCGAGACAGCTGGACTATGAGAGGCCTAACCACCTGTACGAATTTGTAGTCATGGCAGTAGACAAGGGAAAGGTCCCCAGAACAGGCACTGCCACAGTCAGGATACGCATGTCCAACGTCAACGATGAACCCCCGGAGTTTTCACAGAATGTCTATCGGACATTTGTCTCTGAGGATGCAGGGCCCAACACTTTGGTTGCCACAGTACTCGCCAAGGACCCTGATGGAGATGGAATCACCTACAGGATCACGACAGGAAACGAGGAGGGCAATTTTGTCATTGACAGCCAGAAAGGATTAATACGACTCCGTTCGAGCCCCCCGCCCAAGCTACAGGGAGTGGAGTACATTCTTAATGTCACGGCAACAGACGACAATGCTTCAGGTGGGCCACACCCTCTCTCAAGCATGGCTCAGGTGATTGTGGGAATCGATGATGTGAACAACAACAAGCCCGTGTTTGAGAAGTGTCAGCTTTACCGGGAGCATGCATCTGTGTTGGAGAACCAGCCGGCAGGAACCTTTGTCCTGCAGGTGCACGCAGTCGATGCTGATGAAGGAGCCAATGGGAAGGTGACTTATGGATTCATGCACAAAGATGGGACTATACCAGCTTTCACTATCCACCCAGAGACAGGGGTGATCGTCACAGCCAGGAGGTTTGACCGCGAGCAGCAGAGGGAGTACGCCATCACCGTCACGGCAACAGACCAGGCTGCAGAGCCTCTCATTGGGATCTGCCAGCTCAACATTTTCATTCTGGATGAAaatgacaatgacccgaagTTTGAAAACTTGCATTATGAGTATTTCCTGAGAGAGGACACTCTGATAGGCACGAGTTTTTTGCGTGTTGCTGCACATGATGATGACTACAGCACCAACGCAGCCATCATGTACTCCATGTCAACAGAGCAGCCCGAGTACCTCCGTGTCAACCCCCTCACCGGCTGGGTCTACGTCAACGAGCCCATATCCCAGAGGTCCTACATCTCTCGGCGGATAATAGCCACGGACGGTGGGAACAGGAGCAGCTCCGTGGAGTTGGCTGTTACCATCACCAATGTTAAGAACCAGCCACCACAGTGGGAGAGGGACAGCTATGAGGTGGTCATCCCCGAGAACACCATGAGAGACACGCCCATCGTGACCATCAAAGCCATTTCCCCACTGGGTGACCCACGAGTCACTTACAACCTGGAGGATGGGCTTGTTCCAGAGACCAACATGCCTGTGCGCTTCTATCTGACACCCAACCGAGAGGACAGCTCAGCCTCCATACTGGTGGCAGAGCCACTGGACTACGAGACCACAAAgaacttcatattgagggtgcGAGTGCAAAATGTAGCAGCTGTGCCCCTGGCTGCCTTCACTACTGTCTACATCAACATCACAGATGTGAACGACAATGTTCCTTTTTTCACCTCATCCATTTATGAGGCCACAGTAACTGAAGGAGCTGAAATAGGGACCTTTGTGCTCCAAGTGTCAGCCACTGACCTGGACCTTGGTCTGAATGGAAAAATTTCTTATTCCTTGCTGAATGACCGCAGTGGAGATTATATGGTTTTCCGTGTCGACCCTGAAAATGGGGCGATTTACACAGAAGCAGTGTTTGACAGGGAAATGAAGGGCTCCTATCTTCTGGAGGTGAAATCTATGGATGGCTGGGAGTCTGCCAGACCAGGCAAGCATGGGCAGCCCAATTCAGACACGGCGTATGTGCGCATTTTTATCAGCGATGTGAATGATAACAAGCCTGTCTTCGCTCAGAATGCCTATGAAGTGAACGTCGATGAGGACGCCGATGTCGGCTTTGCCGTTGTCACTGTCAGTGCTAATGACGAAGATGAAGGTGCCAATGCAAAACTGCGTTACCAGATCACTTCTGGCAATACCGGGGGAGTGTTTGATGTTGAACCTGAGGTTGGTACCATCCTCATTTCACAGCCACTCAACTACGAACAAGTGAAGAAGTACAGACTCTATATCCTGGCCTCTGATGGCAAATGGGAAGACTACACTGTTGTCAATATCAACGTGATCAATAAGAATGACGAAGCTCCGATTTTCTCAATGAATGAGTACTATGGCAGTGTGACAGAGGAGCTTGATGGATCCCCAGTGTTTGTGCTTCAGGTAACGGCCACAGACCCTGACAAAGATGCTGACCAAAGTGCCTTGAGATATTCTTTGCATGGACAAGGAGCTGAAAGTGAATTCATAATTGACGAGGTGACTGGGAAGATCTACGCGCAGAAGACGTTGAATCGGGAGGAGCGTGCAGTCTGGCGTTTTGTTGTCTTGGCTACTGACGAGGGCGGGGAGGGGCTCACTGGCTTCACTGATGTCATCATCAATGTGTGGGACATCAACGACAATGCTCCCATTTTTACCTGCATGCCTGATAACTGTAATGGGAACGTGCTGGAGAATTCCCCTGCGGATACGTCTGTTATGGAAATGACTGCCACAGATCTCGATGACACCACCGTTGGCCAGAACGCTGTGCTCACTTACAGAATAGTGGGCAATGCCAAGAATGGTATCAACATCGATTTGTTCAACATCAACCCCACCACAGGAACAATATTTGTAGCCCTTGGAAACCTGGACCGGGAAAAAGTGGATAAGTACTTTCTTGTTGTTGAAGCAAAAGACGGGGGAGGGATGACAGGAACCGGAACTGCAACCATCTGGGTAACCGATGTTAATGACCATGCTCCAAGGTTTACCAGTAATTTGTGCAATGCCAGAATCTCAGAGAACAGAGAGCTGAACTCTGCTGTCATGGATGTTTTGGCTACAGATGCAGATGTAGGAGAGAATGCCCAGTTGACTTTTAGCATTATTGGAGGTGACCCGGAGCAAAAATTCTACATTGAGAACCACAAGAAGGAACAGCATGGAACCCTCAGATTGAAAAAGAAACTGGACTACGAGAAATCGAATGAGCAGCACTTTAATCTGACCATCAAAGTGGAGGATCTTGATTTCTCCAGCATGATCCACTGTATTATTGAGGTTGATGACTACAATGATCATGCTCCTGTCTTCATTCCCCATTTTATAGTGCTCCCCCCCTTGCTAGAAAACATCCCAGTTGGCACTAGCATTACCAAGGTTACAGCCAGCGATTCAGACTCTGGTCTGAACGGAGACATTACATATAGCATCCTTCCAGATTCAGACCCATATGGGCAGTTTTCTATTGACCAAGCAGGTCAAGTCATAGTTGCAAGCCCATTGGATCGAGAAACTGTGGCTCAGCTTTATTTAGTCCTGTTGGCTACTGATCAAGGAAGTCCTGCACAGACAGGCAGTGCCACTGTGCAGCTGGCCTTGATTGACATCAATGATAATGGCCCAGAGTTTGAAGCTGCTTACATGCCAGTGGTTTGGGAGAATGTTCCTGGGCCTCAGATTGTAAGGATGAACCAGACTTCCCAGCTTCTCTATGCAGTTGACAGGGATAGCACAGAAAATGGGCCTCCTTTTTCATTCACGTTGCCTCCACAGAATCGAAACAGCACTGACTTTGTCCTCAGAGACAATGGTAACAACACAGCAACTGTGACAGCGCTGAGGACATTCGACCGGGAGAAGCAGAAGGAGTTTTATCTGCCAATCATCCTGAAAGATAGTGGGCACCCTCCAAAGAGTGCGACCAACACTCTCACTATCACCATTGGAGATGAAAACGATCATCCCCACCTCTCTGGAGACAAGGAGATTTACATCAACAGCCATAGAGGCAGAATGCCGACGACTGTTCTGGGGAAAGTGTACGCTCCAGATCCCGATGACTGGGACAACAAAACATATGCTTTTGAAGGATATGTTCCCAaGTATTTCATTCTAAACAAAAGGACTGGCTTCCTCATAATAAAGGAGAATGCCCCTCAGGGTACTTTTGAGTTGAAGGTGCGCGTGTCCGATGGCATCTGGCCTGATGCCGTGTCGAGTGTGAAGGTGCACGTGAAAGAGCTCAGGGACGAAGCCATCTACAACTCAGGCTCTATGCGAGTAGCAGATATGACGGCCAAGGAGTTTATTCGTAAAGGAGCAGATGGGAAGAGTCGTTATGCGATGTTCAAGCAGTTCCTGGCGGAGATATTGCCAGCTAACCCTGACAATATCAACGTGTTCAGCCTGATGAACGTGAAGGAGCGAATGCTGGACGTGAGGTTCTCAGTGCACAGCTCTCCCTACCTGAGGCCGGAGAAACTGTATGGATACATTGCTGCCTACAAACAGAAGCTGCAGTTGACTCTCCAGGTGAACATCAGTCAGGTCCACGTCGATGAGTGTGCTGAGACAGACTGCATGGGCAGTGCCGGCTGCACCAACCACCTGACCATCAGTGACACGCCCACCGTGGTGGATTCTGGGAGCATGTCCCTGGTGTCTGTGACAGTGGGGGTCACCGCAGTGTGCACCTGCAGTGGCCGGGAGCACTCACACCAGCCATGCGCTTCGTACCCCCGTAACCCCTGCCACAACGGGGGCGTCTGTATAGACAGCCAGAACGGATACAGATGTCAATGCCCTCCACAATTTGAAGGGCCTGAGTGCCAACAGACCAAGCACAGTTTCCATGGTGATGGCTatgcctggtttcctcccatAAGGCCCTGTTTTGAGAGCCATCTCTCCCTGGAGTTCATCACGGAGGTTGCAGATGGGCTGCTCCTGTACAGTGGCCCTGTGGCTGAGCTCCAGCCCTGGGACCCTGAAGACTTCATGGCAATAGagCTAATAAATGGCATGCCAgccttaaaaataaaccatggcTCAGGCACTTTGGTTCTGCAGTTGCCAAGCAACGTCAATGTAGCAGACAGACGGTGGCATCGTTTGGATGTAAGAAGCAACAGCAAGGAAGTGCACTTTACACTAGACAGATGCAGTGGCTCTGCAGTCATGGAGGTTGAGGGACTGGGCAACTGGCTCTCCTCCGAGGACCACTCTTCCTGCGAGGTCACAGGGGTCACGCCAAACCTGGACAGGCACCTGAATGTGACTCAGGTCTTGCAGCTGGGAGGCGTTAATGAGAAGCTGCCCTACAACTACCCCCAATTACAGCAGAGACACTTCACTGGCTGCATCCGAAACCTAATAATGGATAGCAAGTTCTATGATCTAGGCTCCCCCGCCGAATCCTTCAACAGCTCCCCCGGCTGCTTGATGACTGATGGGAACTGTGTGAACATGGGCTACCCCTCCTGTGGCCCCCGCGGCAGATGCCATGGGGAATGGGGCTCCTTCAGCTGCCAgacattttgtgtttgtctgccagAGGTGCCAGAGTTCTCATTCGATGGCAGGAGTTTTATCCACTACCAGCTGGCTGCTCCACTTCCCGCCAGGAAGACGCAGGTGCAGGTACTGATCAGAACCCGGAAACATGGCAGCTCCATCATCAGCTTCACCTCCAAAGAGCAGAAGGAATATCTCCGAGTAGAGGTATTCCAAGGTTTGCTTGCAGTGTTTTATAATCTGGGTGATGGGGACCACAGCTTCACACTGCCTTCCTACCGCATCGACAATGGGGAGTGGCACGAAATACACCTGGAGCGCCATGACAAAGAGTTCACCCTGCAACTGGATGGAGGAGGGGGCAAGAGGGAGGCCACATCGTCCCAGGGGAGGAACCGGGAGATTGTCATCGACCCCAGTGTGGTGATGCTTGGAAACTTTTTCCCTACCAGTCACAACCGAAGCTTTCAAGGCTGTATGAGGGACCTCCGGCTGAATAACCGATATGTGCCGCTGGACCAGAGTAAAGAGGGGGTGTCTATTGTGAACTCTCAGGGCGTGACGGCAGGCTGCTTCTCAGACGCCTGCAGGAAGAACAAGTGCACCCCACCCTTCACCTGCGTTGACCTCTGGAGGATGCATGAGTGCAGGTGCCCACCTGGTCACATGGTGATGGAGAACTCCACTGGCAAATTCTGTGTCTACACGCTGTGTGCCAACCGTCCATGCCACCATGGCACCTGTGTCGCCCAGTCGCCCTCCAAATTCACCTGCCACTGCCCTGAGGGCTACACGGGCCGGCACTGTGACATCACCCTGGCTATATACCGAGATGACGTGGGGCTCAGTTTCAGCTCCATGTTTGCAATCTGCATTTGCTTCTTGGCACTCCTAGTGCTTCTGCTTGGCATTTTCCTGTGGACCCGCTGGAAGAGCTATAAGGGCCTGAAGGAGGGGGTGTATCACGTGTCGGCTCACCATGATGGCTGGGAGGACATCCGCGAGAACGTGCTCAACTACGACGAGGAGGGCGGCGGAGAGCAGGACCAGAATGCCTATGACATGGCAGAGCTGCAGAAATCCCTGCAGCCCAGCCCGGCCCAGTCCATCTACACAAGGCCCAGAACTGGACACCTCCATCAGGACAAAGCAACGCTTCGGAGGGATGTCCCACCAGCCCGGACCCAGGTTCAGGGGCCTGTCAATGCCTCCCGGAAAAGCCTGTCCTTCTCGAGCCAGGACCTGGCGCGCTACCTCTGTGAAATCATCAGGGATGCCGACCAGCACCAGGAGAATCCGCCCTTTGACTCCCTGCAGGTGTTCTCCACCGAAGGCGGGGGCTCGCTGGCCGGGAGCCTCAGTTCCTTCAGCTCGGCCGGCCTCGATGAGGATAAGAGCTACGATTACCTGAAAGAGTGGGGTCCCAGGTTCGAGAAGCTCAAAGCACTTTATGAGAGAGCAGAGGCCACTGACATCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78983 lncRNA upstream 342352 18438202 ~ 18440919 (+) True G63097
TU78952 lncRNA upstream 388965 18394101 ~ 18394306 (+) True G63069
TU78951 lncRNA upstream 389965 18393066 ~ 18393306 (+) True G63068
TU78938 lncRNA upstream 422778 18360275 ~ 18360493 (+) True G63058
TU78865 lncRNA upstream 572242 18210769 ~ 18211029 (+) True G62994
TU79125 lncRNA downstream 419685 19282958 ~ 19283173 (+) True G63203
TU79130 lncRNA downstream 463322 19326595 ~ 19329495 (+) True G63208
TU79131 lncRNA downstream 498599 19361872 ~ 19363484 (+) True G63209
TU79174 lncRNA downstream 767001 19630274 ~ 19630567 (+) True G63248
TU79186 lncRNA downstream 789951 19653224 ~ 19654272 (+) True G63259
AMCG00020432 mRNA upstream 13846 18765518 ~ 18769425 (+) True AMCG00020432
AMCG00020429 mRNA upstream 55302 18707806 ~ 18727969 (+) True AMCG00020429
AMCG00020430 mRNA upstream 102475 18671902 ~ 18680796 (+) True AMCG00020430
AMCG00020428 mRNA upstream 114631 18625968 ~ 18668640 (+) True AMCG00020428
AMCG00020427 mRNA upstream 165599 18609769 ~ 18617672 (+) True AMCG00020427
AMCG00020436 mRNA downstream 306039 19169312 ~ 19173385 (+) True AMCG00020436
AMCG00020439 mRNA downstream 733930 19597203 ~ 19602324 (+) True AMCG00020439
AMCG00020438 mRNA downstream 771114 19634387 ~ 19636167 (+) False AMCG00020438
AMCG00020442 mRNA downstream 963536 19826809 ~ 19832079 (+) True AMCG00020442
AMCG00020443 mRNA downstream 1372323 20235596 ~ 20237641 (+) True AMCG00020443
TU78921 other upstream 449239 18332569 ~ 18334032 (+) True G63045
TU78779 other upstream 711228 18067787 ~ 18072043 (+) True AMCG00020407
TU78775 other upstream 721407 18058558 ~ 18061864 (+) True AMCG00020408
TU78735 other upstream 854367 17928328 ~ 17928904 (+) True G62895
TU78611 other upstream 1311402 17459160 ~ 17471869 (+) True AMCG00020371
TU79166 other downstream 733965 19597238 ~ 19600737 (+) False AMCG00020439
TU79182 other downstream 768052 19631325 ~ 19636221 (+) True AMCG00020438
TU79495 other downstream 3272095 22135368 ~ 22142157 (+) True AMCG00020470
TU79558 other downstream 3495555 22358828 ~ 22372760 (+) False AMCG00020487
TU79808 other downstream 4207138 23070411 ~ 23074945 (+) True G63786

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00068133 True 10842 mRNA 0.51 33 NC_007118.7 47417529 ~ 47850702 (-)
grasscarp (Ctenopharyngodon idella) CI01000026_16297047_16419596.mRNA True 8804 mRNA 0.51 36 CI01000026 16296642 ~ 16419739 (-)