RNA id: AMCG00020433


Basic Information

Item Value
RNA id AMCG00020433
length 4412
RNA type mRNA
GC content 0.46
exon number 6
gene id AMCG00020433
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 18908978 ~ 18915511 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGAGAGCAGCAGTATTGCAGTTCTCGTTCCTCACAGCAGAGGGCAGGAGGCTGTGCTCATCCCTGAGAGGGTAGCGAGTGCTAGGTTGCAGGGCTCCGATGGGAAGCAGAAGCAAAAGGCCACCGACTCTCTGATCCAGGTCATAGAGAAACTGAGCAAAATCGTGGAAAACAAAAGACCCAGGCGGTGTACGCTTTCAGGAAAAAAGCGACCCCACTTAACGTGTCCATCTGTGGGTGTGGAAAGCAAGGAGAATTTTGAAGCCCCCTCTAAAATACCAAAAGATTCTGAAGCACAACGGTGTAGCGTGGATGTGCAAGAGGAATACTGTTTATCGCAGGATGTGCAGGACAGCTGTGGCAAAACGGTCACCTGCTATCAGTGCAGTCTCTGCAAGTTCATCTCTCCAACGCTGACCTCACTCAAAGATCATATAAAGGAGCACGACCAGCAGAATGAGGTGATACTGGTGTGTTCTGAATGCTGCTTTACCTCCAATCAGCAGGAGGAGTTTAAGGCCCATTTGAGGATTCATATAGAAAACAAAGAGCCACTCAAGAGCTTAGCCACAAATCACACGCAGGAGCTGCAGTCTCTCTCGACAGCCATGGGAAAAGAACTTGTGTACACTGGGGAGATTGGGGGCTTGCCATTGGCTTTGGAAGGAGAAGAGGCCAGAGTGTACAATTCGGAGGGAGAGCCTGTGAAAAAGAAATGGTACACCTATGAGCAGTATGGCATGTATAGATGTTTGATCTGCAGCTACACCTGTGGCCAGCAGCGCATGCTCAAAACCCATGCCTGGAAGCATGCAGGCTTAGTCGACTGCTCCTACCCCATATTTGAGGATGAGTTGGAGACCTCTTTAGTGCTGGACTCAGCAGCTGTCCCTCCGTCTGATGAGGCGGTTGTGGTTCTGACTCCTGTGAGTAAACCAGAAACGCTGCACAGTGTCCCTTCCTTCCAATTTAAGCTCTGTGCCTCCAGCACGGACTCAGAGGAGACCTCAGCAGCAGCCCCGGCTGCAGAAGAGACTTCAGAGGAAGTGTACCATGCTAAAGTCCAGGTAACGGAAGAGGAGGTTGTGGAAGAGCAAATGATTTCCGATTCGGAGCCTGATCCCGGCACGGCAGACAGCCTCCTCTCCTCTGCCCAGAAGATCATAAGCTGCAGCCCAAACAGAGCAGGGCATGTGAACGTCATAGTGGAGCGTCTTCCAGGAGCAGAGGAAACAGTTGCCACCAAGCCCTTCTTGGTCAACCCGGATATTGAGGTGGAGAAGAGGCTGCTGACTGAGGAGTCTCCGATATATTACGAGGAGGACCCTGAGGATTTCCCGACGAGCAAAGGCAGCATTGCCGTAGAGGAGGTGGTCATCGGGTGGTGCAACAGCGACAAGCAGAGCGAAGACGAAGCGTCCAAGGATTCGTCCGTAGCGGCTGATGAAAACGTCCCCCCGATTCGGAGGCGGACACATTCGGAGTCCCTGAGGCTGCACTCCCTGGCCGCTGAAGCTCTTGTCGCCATGCCCACTAGAACACCAGAGGTGATGAAGGCCAGCATAAAGAGCATCGTTGAGCTGAGCACCCAGAACCCAGACACTGGCCAGAGGTACCTCGACCTTGCAACTACCTCCCCACACAAAGTGACGCCTGCTGTTCGAACCTCTGCAGAAGACTTGACCAACATAAAGGAATCTGGCACAGCACTGGTTGACTTGGAATTGCAGCCCAAATCCAAAGAGGGACTGCCTGAGGGTCCTGTGAAAATGGGCATCAGCATGTCCCTATTGACTGTGATCGAAAAGCTCAGAGAGAGGACTGACCAGAATGCCTCTGATGAAGACATTTTGAAGGAACTGCAGGATAATGCCCAAAGCCAACCTAACAGCGACATCAGTCTGCCAGAGGGGAACCTGGTGGAATATATTCCCGACACCGAGCGGCCATATCGCTGCCGCCTCTGCCGTTACACTAGTGGCAACAAGGGGTACATCAAACAGCATCTCCGGGTGCACCGCCAGAGGCAGCCCTACCAGTGCCCTATCTGTGATCACATCGCCGAGGACAGCAAAGACCTGGAGAACCACATGATCAATCACTGCAAAACCAGGACGTACCATTGCAAGCAATGCAACGAAACATTCTACTATAAAAGTCAACTGAGGAATCATGAGCGAGAGCAACATGGCCTGCCAGACACCCTGACTGCACTGCCTTCTGTCACTGAGACCACTGCCACTGTGGAGGAGTCTGAAGACAAGACTGCAGATGAAGATCTGACCAGTATTCAAAAAATCTACAAATGTGACGTGTGTGATTACACCAGCGCAACCTATGTCGGCGTACGGAACCATAGAAGAATTCACAATTCAGACAAGCCATACAGGTGTTGCAGCTGTGACTTTGCAACAACAAACATGAACAGTCTGAAGAGCCACATGAGGAGACACCCGCAGGAGCACCAGGCCGTGCAGCTGATGGAACAATACAGATGTTCTCTGTGTGGGTATGTTTGCAGCCACCCGCCATCTCTAAAGTCTCATATGTGGAAGCATGCTGGTGACCAAAATTATAACTATGAACAAGTCAACAAAGCTATTAATGAAGCCATTTCACAAAGCAGTCGGTCTCCATGTTTAGCTCCCACAAGAACTGCTGCTGTTGAATCTGTTGTTGAGAGGCCCGGCGTTGGAGCTGGTGGAGCAGACAAGGTGGTGCTTGATCAGAATCCTTCTGCGTGTGCCTCCAAGGACAGTGCTGGGAGGTCGGAGCCCACGCGGGGCCCCAGCCCGGCCACCAAAGTCGCCAGTGTCCCCGAGAAACCAGGCAGTCACACCAGGGCCGGGATGGAGTACTGCATGCTGCTGTTCTGCTGCTGCATTTGCGGCTTCGAATCCACCAGCAAAGAACGGCTGATGGACCACATGAAGGAGCATGAAGGCgagatcattaatataattttgaacaAGGAACAGAGCCCTCAGGCAgctcaaaataatacataatagaTCCCAGGATAGATCCGGAGAGATTGTGTAAAGCTCTCCCAAGTCCCCTGTGAGAGAACAGAGTCCCCCACGTCCCTGTCCCCTCGCCAATGATCCTGTcagatcctgttttttttttttttgggggggtggagggcGTGCTGTCTCTTTACAAGGCTAGCTTTgcagttgctttttttttttttttttctctccaatatttatttttataacattgtCTGCTGTTTTAAGTAATAATTGCCACCTTCAATCATCTTTACTTTCTTTCACAGTGTAAATATGCTGGATTTCcactttttgtttgtgaaattcacatttctgggggggaggggggttccTTTAAAGATAACCGTATCTTGTGTATCTGGATttatggaagaagaaaaaaaatgcatacctCATTAAACCAGCTTctctttttgtaaaaataatacaaaaaaaaatagtacaGAATTTAGCCCATTTCAACgggttatattttttaagtgtgaTTTAAGGCAGCTTTTATTCAAATCACTGTAATACTGTATAAACTATAGGTGTAAACTGTAATTAGACAGACCATGTGTATAGTCTGTATATGGACAGAACATATCTACACTAggctatgtatgtatgtatgtatgtatgtctgtctgtctgtgtgtatatatagtctGATAAGTCAGGTAGGATGCACCCATTTTCaacacagctgtaaaataagattCTTGCCATGCTTAATGTGTATTTCACGTAGTTTGTATTTAccttaatatttattaatttatatttatgcatgtaCTCTTCCGTTATTGCCACGTAACAAAAATAACTCTGTCTGTCGCATGGCCCATATGGTGCTACTCAACTGCTTCTCTTAACCCTTAGGAAATGTCAGTTCTCCCTTAAGGACATAGGAAATCAGGGTAGTCCTAGCCATCGGAGGAATGTACCTTTGATTTGCAACGATTGTGCTAAATTGTAGACGTTGAAATActtgagtttgttttgttttgagtatGTTGTGAAGGCGACATTGTAACTTGATAAGAGTTTAGTAATGATCACCTGTTCTTCAGTCCAATATTCAATTAGACTTTCAAAGGTGCGTTTTTGGTTGATCTTacagtaactttttttttttccccgtgaTGCAGAAAGAAATCTTATGTCACAAAAAATAGCAAACCCTATACTTATAATTTCTCTGAATGTCAtagtacatatattttttttatttattgaggaAAAGAGACTTGAAAACTTAAGATTAAGGGTTTACATTGTAACAGctgttttgtacatttatcTGTACCATAATTCACATTGGCCACTTTTCATCCAGAATGATCAAATCACGCCTTTAAAGCTTTGCTGTATTATAAGTGTAtttagtacattattttgtatttatg

Function

GO:

id name namespace
GO:0043229 intracellular organelle cellular_component
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78982 lncRNA downstream 472039 18436525 ~ 18436939 (-) True G63096
TU78976 lncRNA downstream 510247 18397467 ~ 18398731 (-) True G63092
TU78936 lncRNA downstream 550068 18357825 ~ 18358910 (-) True G63057
TU78888 lncRNA downstream 722928 18184008 ~ 18186050 (-) True G63015
TU78844 lncRNA downstream 770680 18137480 ~ 18138298 (-) True G62981
TU79099 lncRNA upstream 161966 19077477 ~ 19077758 (-) True G63180
TU79184 lncRNA upstream 718783 19634294 ~ 19636243 (-) True G63257
TU79277 lncRNA upstream 1340411 20255922 ~ 20256399 (-) True G63346
TU79287 lncRNA upstream 1373192 20288703 ~ 20299843 (-) False AMCG00020446
TU79396 lncRNA upstream 2167751 21083262 ~ 21083461 (-) True G63447
AMCG00020434 mRNA downstream 7417 18874902 ~ 18901561 (-) True AMCG00020434
AMCG00020423 mRNA downstream 454321 18438204 ~ 18454657 (-) True AMCG00020423
AMCG00020421 mRNA downstream 477723 18419182 ~ 18431255 (-) True AMCG00020421
AMCG00020424 mRNA downstream 493208 18398834 ~ 18415770 (-) True AMCG00020424
AMCG00020422 mRNA downstream 513682 18390806 ~ 18395296 (-) True AMCG00020422
AMCG00020437 mRNA upstream 399284 19314795 ~ 19316145 (-) True AMCG00020437
AMCG00020435 mRNA upstream 407884 19323395 ~ 19438437 (-) True AMCG00020435
AMCG00020440 mRNA upstream 637447 19552958 ~ 19570840 (-) True AMCG00020440
AMCG00020441 mRNA upstream 675156 19590667 ~ 19596696 (-) True AMCG00020441
AMCG00020455 mRNA upstream 685431 19600942 ~ 19606909 (-) True AMCG00020455
TU78822 other downstream 869018 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 893118 18006168 ~ 18015860 (-) True G62961
TU78823 other downstream 911961 17994544 ~ 17997017 (-) False AMCG00020403
TU78680 other downstream 1282789 17610664 ~ 17626189 (-) True G62853
TU78391 other downstream 2115811 16792866 ~ 16793167 (-) True G62618
TU79413 other upstream 2396691 21312202 ~ 21312605 (-) True G63464
TU79676 other upstream 3628331 22543842 ~ 22544689 (-) True G63679
TU79847 other upstream 4239181 23154692 ~ 23161900 (-) True G63819
TU80215 other upstream 5761236 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 6195599 25111110 ~ 25112551 (-) True AMCG00020581

Expression Profile