RNA id: AMCG00020436


Basic Information

Item Value
RNA id AMCG00020436
length 2895
RNA type mRNA
GC content 0.49
exon number 3
gene id AMCG00020436
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 19169312 ~ 19173385 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGTCCTCTAcCTATGTCCCAGATGAGCTAAAGGCAGCCGCTTTGGTGGATGAGGAACTTGAAGAAGATGATTCAGCCGTGGAGGAGGAACCTCCAGTCAAGTACATGTGCTCAGAAAAGGACTTCTTGAAAGACTCCCAGAGCTACCAAGACTCGCCTGCAGCAGAGTTCTCCAGCCATGAGATGGACAGTGAGTCCCACTTGAGTGAAGCCAGTGACAGAATCCTTTTCAGCACTGTCCAGCTCTATCGGCAAAGCAGCAAACTTTATGGCTCCATCTTCACTGGTGCCAGCAAGTTCCGCTGCAAAGACTGCAGCGCTGCCTATGATACCCTAGTGGAGCTGACTGTCCACATGAATGAGACTGGTCATTACCGTGATGACAACCATGAGACGGACAACAACAACCCCAAGCGCTGGTCCAAACCACGCAAACGCTCCTTACTAGAGATGGAGGGCAAAGAGGATGCCCAGAAAGTGTTGAAGTGCATGTACTGTGGACACTCCTTTGAGTCTTTGCAAGACCTCAGCGTACATATGATCAAGACAAAACACTACCAGAAAGTGCCTCTCAAGGAGCCTGTGACCCCTGTTGCAGCCAAAATAATCTCTTCAACCCGAAAGAGGGCCCCTATTGAGTTGGACCTCCCCAGCTCTCCAGATTCTTCCGCAGGGACTCCCAAACCTTCCTTAACAGACTCTAGTGATGTCCTCCAGAAGGCCTCCAATCCTTACATCACCCCAAACAACCGATATGGACACCAGAACGGTGCCAGTTATGCCTGGCAATTTGAATCCCGGAAATCCCAAATTCTCAAATGCATGGAATGTGGGAGTTCCCATGATACACTGCAAGAACTGACTGCGCACATGATGGTTACAGGTCACTTCATTAAGGTGACCAACTCGGCAATCAAAAAAGGAAAGCCAATTGTAGAAGCTCCTGCCACACCAGTGCCAACCACCCAAGCGGAGGAAAAAGTTCAGTCAGTTCCTTTAGCTGCTACAACTTTTTCACCTCCAGCCACTTTCCCCTCCAGTGTCTCCCCAAAGCTCAGCGTGGagataaagaaagaagaaaaagaagaagagtgCACTAAGGAGGTGATCAAGGAAAAGAAATtagaggaggatgaggagaaATTCGATGTCTCCTCAAAATACCATTACCTGACTGAAGAAGACCTGGAGGAGAGTCCAAAGGGAGGATTTGACATCCTTAAATCACTTGAAAATACAGTAACATCTGCTATTAATAAAGCGCAGAATGGTGCCCCAAGCTGGGGTGGTTATCCCAGTATTCATGCTGCCTACCAACTGCCTAATATCATGAAGCTCTCCTTGGGTTCTTCTGGGAAAAACTCtccattaaaatgcatgtttacagGTGGAGAGATTTTGTCCCCAACTAAAAACCAGCCACTTATTTCTCCTCCTATTAGTCAGACCTCACCTCTGCCAAAAAACAATTTCCATGCTATGGAAGAGCTGGTAAAAAAGGTAACTGAGAAGGTGGCCAAAGTGGAAGAGAAAATGAAGGATCCTGAAGTCAAAGCATCACCCCTTAGGCGAATGACACCTTCCCCTTGCAGCAGTGAACCCGGGGAGTCCATGAAAGGTGATTCTCCAAAGGAGAGCAGAGCTAAAAGCCCTGAAAGCAATGTAGGCAGCCACAGTGACATGAACGAGACCCTCACAAAAGAAACAGTTGAGAACGGAACAGACTCTGTGAAACGACCTGCCACCAGTTTGTGTAGCAGCACTGCCATTATCACCGACCACCCTCCTGAGCAACCCTTTGTTAACCCTTTAAGTGCGCTTCAGTCTGTAATGAATGTCCACCTGGGCAAAGCTGCCAAGCCTGCACTACCTGCCCTGGACCCCATGAGCATGCTCTTCAAAATGAGCAACAGCTTGGCAGAGAAAGCGGCAGTAGCCACCCCACCCATGCAGACCAAGAAAACGGAGCATTTGGACCGCTATTTCTATCATGTCAACAATGACCAGCCTATAGATTTGACGAAAGGCAAGAGTGACAAAAGCTGCTCTTTGGGTTCAGCGCTTATGTCATCCACTTCGACGTCGTCTGCTTCTCCTTCATCCGCTGTGACAACGGCAAAGACATCTGCAGTCGTGTCATTCATGTCAAACTCTCCGCTACGCGAGAATGCCTTGTCAGATATCTCTGATATGCTGAGGAATCTGACAGAAAGTCACACATCAAAATCTTCTACACCTACCAGCCTGTCTGAGAAATCGGACGTGGACGGCACTACCCTTGAAGAGCCAGAGGAGATCTCCCCGGCTCAGAAACGCAAGGGTCGCCAGTCTAACTGGAACCCCCAGCACCTGCTTATCCTTCAGGCCCAGTTTGCTGCTAGCCTGAGACAAACATCAGATGGGAAGTACATCATGTCGGACCTTAGTCCCCAAGAGAGGATGCACATCTCAAGGTTTACAGGACTCTCCATGACCACCATTAGCCACTGGCTGGCCAATGTAAAGTACCAGCTGAGAAGGACAGGTGGAACCAAATTCCTAAAGAACCTGGATTCAGGACATCCAGTGTTCTTTTGTAACGACTGTGCTTCTCAGATCCGAACTCCATCCACGTACATTAACCACCTAGAGTCACATCTGGGTTTCAGGTTGAGGGACTTGTCCAAACTGTCCAGCGAACAAATCAATAGccagatcacacacacaaaaagcctATCTGAAAAACTGATCCCTGCCTCCTCCCCAGAGGAGGAGAGTGGCACCTCTTACCAGTGCAAGCTCTGTAACCGGACTTTTGCGAGCAAGCATGCTGTCAAGCTACACCTCAGCAAGACTCACGGCAAGTCTCCCGAGGATCACCTCATGTATGTGTCTGAGCTGGAGAAGCAGTAG

Function

GO: NA

KEGG:

id description
K09236 TSHZ; teashirt

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78983 lncRNA upstream 728393 18438202 ~ 18440919 (+) True G63097
TU78952 lncRNA upstream 775006 18394101 ~ 18394306 (+) True G63069
TU78951 lncRNA upstream 776006 18393066 ~ 18393306 (+) True G63068
TU78938 lncRNA upstream 808819 18360275 ~ 18360493 (+) True G63058
TU78865 lncRNA upstream 958283 18210769 ~ 18211029 (+) True G62994
TU79125 lncRNA downstream 109573 19282958 ~ 19283173 (+) True G63203
TU79130 lncRNA downstream 153210 19326595 ~ 19329495 (+) True G63208
TU79131 lncRNA downstream 188487 19361872 ~ 19363484 (+) True G63209
TU79174 lncRNA downstream 456889 19630274 ~ 19630567 (+) True G63248
TU79186 lncRNA downstream 479839 19653224 ~ 19654272 (+) True G63259
AMCG00020431 mRNA upstream 306039 18783271 ~ 18863273 (+) True AMCG00020431
AMCG00020432 mRNA upstream 399887 18765518 ~ 18769425 (+) True AMCG00020432
AMCG00020429 mRNA upstream 441343 18707806 ~ 18727969 (+) True AMCG00020429
AMCG00020430 mRNA upstream 488516 18671902 ~ 18680796 (+) True AMCG00020430
AMCG00020428 mRNA upstream 500672 18625968 ~ 18668640 (+) True AMCG00020428
AMCG00020439 mRNA downstream 423818 19597203 ~ 19602324 (+) True AMCG00020439
AMCG00020438 mRNA downstream 461002 19634387 ~ 19636167 (+) False AMCG00020438
AMCG00020442 mRNA downstream 653424 19826809 ~ 19832079 (+) True AMCG00020442
AMCG00020443 mRNA downstream 1062211 20235596 ~ 20237641 (+) True AMCG00020443
AMCG00020445 mRNA downstream 1082392 20255777 ~ 20260661 (+) True AMCG00020445
TU78921 other upstream 835280 18332569 ~ 18334032 (+) True G63045
TU78779 other upstream 1097269 18067787 ~ 18072043 (+) True AMCG00020407
TU78775 other upstream 1107448 18058558 ~ 18061864 (+) True AMCG00020408
TU78735 other upstream 1240408 17928328 ~ 17928904 (+) True G62895
TU78611 other upstream 1697443 17459160 ~ 17471869 (+) True AMCG00020371
TU79166 other downstream 423853 19597238 ~ 19600737 (+) False AMCG00020439
TU79182 other downstream 457940 19631325 ~ 19636221 (+) True AMCG00020438
TU79495 other downstream 2961983 22135368 ~ 22142157 (+) True AMCG00020470
TU79558 other downstream 3185443 22358828 ~ 22372760 (+) False AMCG00020487
TU79808 other downstream 3897026 23070411 ~ 23074945 (+) True G63786

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000026_15930136_15933539.mRNA True 3659 mRNA 0.49 2 CI01000026 15929803 ~ 15933539 (-)