RNA id: TU79182


Basic Information

Item Value
RNA id TU79182
length 1601
RNA type TUCP
GC content 0.35
exon number 3
gene id AMCG00020438
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 19631325 ~ 19636221 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTGGACACCGGGCTCTTTTTCCCATGATCCACCGCGACCATGACTGTGTAGTGAAAGtaagaatacaataaaacaagtttGCGACATTGTAACTCAATCTGATGCTTTTAACAACGTTTTAGAGGAGAACATATTCCTGGTAACACGTGAGCGCAAATGAAGGCTGCTGTGAAAAATTCTGGGAAAGGGGCAATGATGGCGGGAGCAATAGCATTTGCTGGCGGTTTAATGGGAGGTCCTCCAGGGATTGCTGTTGGTGGTGCAGTGGGAGGATTGCTGGGCTGCTGGATGACTAGTGGGCAGTTTAGGCCACTTCCTCAGATCATAATGGAATTGCCCCCTCATCAGCAAGAGAAGCTTTACAATGATGTCATGGCAATCCTTGGTAACTTAAACTGGACCGACCTGGCTCAGCTGACTGCACTGGTTATGGGGAATGCAACACTGAAACAGCAGGTGGCAGCAGCACTTGTCAACTACGTCACACGGGAACTAAGAGCAGAAGTACATTATAGTGACTGATTATAGAAAAGCATAGTTTGTTTTCTATGAAGaaccatatatatattactaacTGTGTTCTGCTTTAGCCCTTTGTTGGAAAGCATTCAATTTATGAACTACAAGGTAGAAGAGAAGTGTAATCTCGATAGTGTGTAGCATGATGAACAaagactttaattaaaaatgctacACAAGGTATACAAACTGACCAACAATTACAGAAAGTAAGCAACATTGTATCGTTGAATTACCCATTTGATGaatatcaaaaaacaaatgcaagaatCATGTtcaatgctatatatataatcacataaGTGAATATCTGTTTCAGATATTGTGTCcaaaacagaatacaataaaactgtatatatagaaaCACTGCACTGTGGAAGGAAGGTAAATGGGACACTCCATTGATGTTCAGGCTGTGGTGATTGAGATATTTATTATGTCTAGTTCagtttaaaattgttaaaaagaGATGGAATAAAATCTTATACAGTTATAATCACAGAATATTAGAAATTTGgctttctgaaaaaaaatggctttgataaatcactgaaaaatatataacttaaatgaaaagcttaattgttaaatacatataaatacatgtttagaaATTAATTCAGAATTTCTTGGATCTCTAAGCTACTGTTTACATATCTTACAATTGTAAAGTGGATTTTCCAAATACCTTCTAGAAAAGGGGGTCTTTTGTATCCTCAGGATAgtccccccccacaaaaaaacactCATTCATTGTGGACTGGAGTGGCATTTGTTCAATAATTTAATGTgaagtttatatttgtattatacatttttttatttaattatttccagaatGCTGTGCCATTAAGTCACTATAATAATAGTTGTTGGTAGTGTAACTATATAGATACTTAGTGGAAATACTTAAGTGAAAATACCTGGTAGAAAATACATGAACTTGTGAGGAAATGTATGTCTGTAGGTTTTATTGGAATTTCTAGAAGTGAAGGATTTCTTgtttgaatacataaaaaaaaaaaaacatgaataaaatgatGTTCACATGCCAAAATCTTATACGGGTGCTTTTATCtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79174 lncRNA upstream 758 19630274 ~ 19630567 (+) True G63248
TU79131 lncRNA upstream 267841 19361872 ~ 19363484 (+) True G63209
TU79130 lncRNA upstream 301830 19326595 ~ 19329495 (+) True G63208
TU79125 lncRNA upstream 348152 19282958 ~ 19283173 (+) True G63203
TU78983 lncRNA upstream 1190406 18438202 ~ 18440919 (+) True G63097
TU79186 lncRNA downstream 17003 19653224 ~ 19654272 (+) True G63259
TU79242 lncRNA downstream 231564 19867785 ~ 19868282 (+) True G63313
TU79247 lncRNA downstream 560956 20197177 ~ 20197427 (+) True G63318
TU79257 lncRNA downstream 602609 20238830 ~ 20240926 (+) True G63328
TU79265 lncRNA downstream 612611 20248832 ~ 20251957 (+) True G63334
AMCG00020439 mRNA upstream 29001 19597203 ~ 19602324 (+) True AMCG00020439
AMCG00020436 mRNA upstream 457940 19169312 ~ 19173385 (+) True AMCG00020436
AMCG00020431 mRNA upstream 768052 18783271 ~ 18863273 (+) True AMCG00020431
AMCG00020432 mRNA upstream 861900 18765518 ~ 18769425 (+) True AMCG00020432
AMCG00020429 mRNA upstream 903356 18707806 ~ 18727969 (+) True AMCG00020429
AMCG00020442 mRNA downstream 190588 19826809 ~ 19832079 (+) True AMCG00020442
AMCG00020443 mRNA downstream 599375 20235596 ~ 20237641 (+) True AMCG00020443
AMCG00020445 mRNA downstream 619556 20255777 ~ 20260661 (+) True AMCG00020445
AMCG00020444 mRNA downstream 663792 20300013 ~ 20310689 (+) True AMCG00020444
AMCG00020458 mRNA downstream 831167 20467388 ~ 20489997 (+) True AMCG00020458
TU79166 other upstream 30588 19597238 ~ 19600737 (+) False AMCG00020439
TU78921 other upstream 1297293 18332569 ~ 18334032 (+) True G63045
TU78779 other upstream 1559282 18067787 ~ 18072043 (+) True AMCG00020407
TU78775 other upstream 1569461 18058558 ~ 18061864 (+) True AMCG00020408
TU78735 other upstream 1702421 17928328 ~ 17928904 (+) True G62895
TU79495 other downstream 2499147 22135368 ~ 22142157 (+) True AMCG00020470
TU79558 other downstream 2722607 22358828 ~ 22372760 (+) False AMCG00020487
TU79808 other downstream 3434190 23070411 ~ 23074945 (+) True G63786
TU79994 other downstream 4415768 24051989 ~ 24053877 (+) False G63939
TU79996 other downstream 4415768 24051989 ~ 24055592 (+) True G63939

Expression Profile