RNA id: TU79166



Basic Information


Item Value
RNA id TU79166
length 833
RNA type TUCP
GC content 0.45
exon number 6
gene id AMCG00020439
representative False

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 19597203 ~ 19602324 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


caaaaactaagaaaaaaataaagtcaaaatgAAGTTTCTCAGTTTGTTCGGACGGCTGAAATCCAATGTCATCGGCATGGTTCACGTTAAGGCGTTACCAGGTACTCCGCTGAACAGATTAACAATGGCTGAGATAACAGAAGAAGCCTGTCGTGAAACAGAAATATACAATGAAGCAGGCATTgatGGACTCATTATTGAAAACATGCATGACCTTCCTTATACAATGGCTGTTGGTCCAGAGGTCTGTGCGTCAATGACAGCAGTCTGCACTGCAGTGAGACAGATGTGTCCACTCCTTCCTATTGGAGTCCAGATACTGTCTGCTGCTAATCAACAGGCTCTTGCAGTAGCCCTGGCTTCAGGTCTTGATTTCATACGGGCTGAAGGATTTGTGTTCTCACATGTTGCCGATGAAggtcttttaaatgcatgtgctGGGGACCTCTTAAGATACCGCAAACAAATAGGGGCTGAACACATCCAGATTTTCACTGATATTAAAAAGAAGCACAGCTCCCATGCCCTGACATCTGATGTCAGTCTGTCTGAAACTGCTAAAGCTGCCGAGTTCTTTCTCTCTGATGGTCTCATTGTGACTGGCATAGCCACAGGGATGCAGGCTGATCCTCAGGAGCTCAGAGAAACTGGACAGGCAGTAAGAATCCCAATTCTGATTGGCTCTGGTGTAACCCATGAGAATGTGGAGAACTACCTCGATGCAAGTGGAATGATCATTGGCTCCTACTTCAAGAAAGGAGGGTTTTGGGCGAACAATGTTGACCCAGAGAGAGTCAGGAAATTTATGGGAAAGATGCACAAGCTGAGAGTAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU79131 lncRNA upstream 233754 19361872 ~ 19363484 (+) True G63209
TU79130 lncRNA upstream 267743 19326595 ~ 19329495 (+) True G63208
TU79125 lncRNA upstream 314065 19282958 ~ 19283173 (+) True G63203
TU78983 lncRNA upstream 1156319 18438202 ~ 18440919 (+) True G63097
TU78952 lncRNA upstream 1202932 18394101 ~ 18394306 (+) True G63069
TU79174 lncRNA downstream 29537 19630274 ~ 19630567 (+) True G63248
TU79186 lncRNA downstream 52487 19653224 ~ 19654272 (+) True G63259
TU79242 lncRNA downstream 267048 19867785 ~ 19868282 (+) True G63313
TU79247 lncRNA downstream 596440 20197177 ~ 20197427 (+) True G63318
TU79257 lncRNA downstream 638093 20238830 ~ 20240926 (+) True G63328
AMCG00020436 mRNA upstream 423853 19169312 ~ 19173385 (+) True AMCG00020436
AMCG00020431 mRNA upstream 733965 18783271 ~ 18863273 (+) True AMCG00020431
AMCG00020432 mRNA upstream 827813 18765518 ~ 18769425 (+) True AMCG00020432
AMCG00020429 mRNA upstream 869269 18707806 ~ 18727969 (+) True AMCG00020429
AMCG00020430 mRNA upstream 916442 18671902 ~ 18680796 (+) True AMCG00020430
AMCG00020438 mRNA downstream 33650 19634387 ~ 19636167 (+) False AMCG00020438
AMCG00020442 mRNA downstream 226072 19826809 ~ 19832079 (+) True AMCG00020442
AMCG00020443 mRNA downstream 634859 20235596 ~ 20237641 (+) True AMCG00020443
AMCG00020445 mRNA downstream 655040 20255777 ~ 20260661 (+) True AMCG00020445
AMCG00020444 mRNA downstream 699276 20300013 ~ 20310689 (+) True AMCG00020444
TU78921 other upstream 1263206 18332569 ~ 18334032 (+) True G63045
TU78779 other upstream 1525195 18067787 ~ 18072043 (+) True AMCG00020407
TU78775 other upstream 1535374 18058558 ~ 18061864 (+) True AMCG00020408
TU78735 other upstream 1668334 17928328 ~ 17928904 (+) True G62895
TU78611 other upstream 2125369 17459160 ~ 17471869 (+) True AMCG00020371
TU79182 other downstream 30588 19631325 ~ 19636221 (+) True AMCG00020438
TU79495 other downstream 2534631 22135368 ~ 22142157 (+) True AMCG00020470
TU79558 other downstream 2758091 22358828 ~ 22372760 (+) False AMCG00020487
TU79808 other downstream 3469674 23070411 ~ 23074945 (+) True G63786
TU79994 other downstream 4451252 24051989 ~ 24053877 (+) False G63939

Expression Profile