RNA id: AMCG00020441


Basic Information

Item Value
RNA id AMCG00020441
length 2950
RNA type mRNA
GC content 0.42
exon number 11
gene id AMCG00020441
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 19590667 ~ 19596696 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAAAGCAACATGTAAGTCATTCTTTCAATAAATGCCGATCTCCCAAGTTTTCACGTCATTATACGTTTATTGTTTGCAGCAAATTGTTTTACTTGTAAGGTATCGATGGCAGGAGGGAAATAAACGGACGTGGCGCGCCAGGTTTTTAAATGACCCGCTCTGCCTGCCCCTTCGTCTACGGCGAGACTACAGGCACTTTATAAGGATGAGGCGCAAAACTCGCCGCGCCAGCTCAGTATAGCAATCGGCAGCTACCCAAGAGGAACACGTCCTGAAGCTGCTGGCACAATAAAAGGCCGACAATATTCATCCTGCACCCCAAAGCCAAGGATCATGCTCGGTATATCCAAATGAACTGACAGAAGCAGTTGGGagttgttctttatttatgaagtgtAGCTTCTAAGGAGAGGATCTGTAAAGGTTAACATTTCCAGTGTAAAGGATTCCCCCGAGGATACAATGCCAAGGAAAGGGTTAAAGAAAGAGTTGCCCATACAGACTACTACAAGCGATGAAGTGACCAAAGAAACCATTGCCACACGCTccaggaaaagaaaagcaaatgttgCCATTTATTTGCCGGATCCGGACGAAGATGTTCTGGAAATGACTAATAAGAAGCAATATGAAAATCAGACCGTCTGGAATCACACAAGTCCATGCAGGCTGATTCACACACCCGACAGAGAAGTAGATGAACCAGTTAAATTGGACAGTGTTGCCTGTGCGCAGTATATGTTAAAGAATATCTTTGTCACACCTACAAGATCCTCCCCACTTCCAGTCCTATGTTGGGCTAATAAAGATGACGTGTGGAACAACCTtctgaaaaaagacaaaacgtACCCACGGGATAATCGATTTCTGGAGAGGCATCCACACCTCCAACCAAAAATGAGGGCCATACTTCTTGACTGGCTAATGGagGTCTGTGAGGTGTACAAGCTGCACAGAGAGACGTTTTACTTGGCACAGGATTTCTTTGACCGATTTATGGCGACACAGATGAACGTTGTCAAAACAAGATTACAACTTATTGGCATTTCCTCTCTCTTTATTGCTGCCAAGCTGGAGGAAATCTATCCTCCCAAGCTGCACCAGTTTGCCTATGTTACAGATGGCGCTTGTACAGAGGATGAAATTCTGGATATGGAACTGATCATAATGAAGcTGATAGATCTGTGCACCTTAGATGTTCGATGCCTAGACTTCTCCTATGGGGTGCTGGCCGCCTCTGCCTTATTTCACTTCTCCTCACTCGAACTGGTGCAGAAGGTTTCAGgCTTTCAGTGGCAAGACCTTGAAAAGTGTGTGAAGTGGATGGTTCCGTTCGCCGTATCCATTAGGGAAGTGGGAAGCTCAGAAATGAAGACCTTCAAGGGGATATCGGCAGATGATATGCACAACATCCAGACCCACCCGCCTTTCCTGGAGACGCTGGACAAAGCTTATGCTTATCAGGCTGTAGAGTCGGAGCAGAACCAGAGGTCTCCAGTGCCTTCGGGGGTTCTCACCCCACCTCCGAGCAGTGAAAAACCAGAACCGTCAAAATCTTGAATGGTGTGGGATCCAGTTTACTCCTCAACATTAGGAAAGTTTCATTGGACATCTTGGTTGGTGTTGTGGGATGAAATTAAGCATTACTGATcacttgatttttaaatgctacATAAGGCACCTGTGTATGTGTGGAATTGAATTGCTAGGTGgagtttttttaagtttttttgtaaattgacaTTTTAGTTGAGAAGATGCCAAGTCCATTACCTGCCAAATATTGAGAGCTCTGTGTGCTCTGAATGCTGCTACATAAGGTGAGACTTGGGATAGTAAATGCCTTGACTGGGTGTTCTGCGTATGGCCCACACTGCCATTCATTGCCTTTTGGAGGCTTGATCTCCACTGCCAGATTAGACATTTGGGACCAAATGTGCGTGCTAAGGGGACCAGAGGAAAAACCAGCTTGATaagcaaaatattttcacaataagGTATTCAACCTCTTTTTACTGCTCAGAGTATTGGTTTACCAAattctaaatgtttttaatgatacaATGCTGCTACCTTCCtgtatatcatatttttaaataaagatactGTCTTGgacagttttatgttttatactgTCCTGTTCATGAATTATCTTCTCTATGGTTCTCTATGTCATGGATGCTCTTGATCAGGTGCAAGTTTTCACTGCTATGTCATCATGTAACTTGAAGGACATCTTTTACTGCTAATTTGTTTTAACGTGGAGGACTAGGGTCGGGGGTGGTCATCACGGTAATGTACTGAATTGCTTTTTATGTACCTAATAGTTAAAAGAACAATGTTTTGCTCTATATACATGGCACTATCTATATAATGTGCTGCAAAAGCATCGCCCTCTTTCCCTCATCTATCTGCCTGGCAGGAGATTAAATGTAGACGGGCCAGAGTCCTAGAACCTCTACTGCAAGCTCATTGATAACATTACTGTAATCTTAAAAGTTTGGGTGTCGACCAGCAAGTGAATGCTTTGAGCCCCCTCTTCCTGTCATGTCAATCATGGTATCATGTGATTGTTGCAAACTATATGCACTTTTGTACTATACCACATTATgatttaatgtgttgttttatcaattaaaagTCCTCTGTGCTTGCTGAAAAGATGTCAACATTGGGTTTTTAGGCATTGCTGACATGAGTTTGTACAGGTGTTTTCATGATTAACTTTTTACATGAGCGAACATGCTTGTACCAAATGCATACTGGAGTAGATAAAGATAACATACTTTCTTGCAACCCTTTTAGTAACCCTTTATTGAGCTTAAACATCCTTGCTCatgtgtgaaatgtatctaaTCAATACATGCAATGCAAGTAATTGAACATGGTATGAAGGTTGTGTCCACCCAAGCTCACCTATGCCACACAACAgaatatttacaatacaaa

Function

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0016310 phosphorylation biological_process
GO:0016301 kinase activity molecular_function

KEGG:

id description
K06626 CCNE; G1/S-specific cyclin-E1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79099 lncRNA downstream 512909 19077477 ~ 19077758 (-) True G63180
TU78982 lncRNA downstream 1153728 18436525 ~ 18436939 (-) True G63096
TU78976 lncRNA downstream 1191936 18397467 ~ 18398731 (-) True G63092
TU78936 lncRNA downstream 1231757 18357825 ~ 18358910 (-) True G63057
TU78888 lncRNA downstream 1404617 18184008 ~ 18186050 (-) True G63015
TU79184 lncRNA upstream 37598 19634294 ~ 19636243 (-) True G63257
TU79277 lncRNA upstream 659226 20255922 ~ 20256399 (-) True G63346
TU79287 lncRNA upstream 692007 20288703 ~ 20299843 (-) False AMCG00020446
TU79396 lncRNA upstream 1486566 21083262 ~ 21083461 (-) True G63447
TU79510 lncRNA upstream 2534306 22131002 ~ 22132737 (-) False AMCG00020471
AMCG00020440 mRNA downstream 19827 19552958 ~ 19570840 (-) True AMCG00020440
AMCG00020435 mRNA downstream 152230 19323395 ~ 19438437 (-) True AMCG00020435
AMCG00020437 mRNA downstream 274522 19314795 ~ 19316145 (-) True AMCG00020437
AMCG00020433 mRNA downstream 675156 18908978 ~ 18915511 (-) True AMCG00020433
AMCG00020434 mRNA downstream 689106 18874902 ~ 18901561 (-) True AMCG00020434
AMCG00020455 mRNA upstream 4246 19600942 ~ 19606909 (-) True AMCG00020455
AMCG00020457 mRNA upstream 26489 19623185 ~ 19626136 (-) True AMCG00020457
AMCG00020456 mRNA upstream 48998 19645694 ~ 19646512 (-) True AMCG00020456
AMCG00020450 mRNA upstream 56127 19652823 ~ 19656766 (-) True AMCG00020450
AMCG00020448 mRNA upstream 92677 19689373 ~ 19692675 (-) True AMCG00020448
TU78822 other downstream 1550707 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 1574807 18006168 ~ 18015860 (-) True G62961
TU78823 other downstream 1593650 17994544 ~ 17997017 (-) False AMCG00020403
TU78680 other downstream 1964478 17610664 ~ 17626189 (-) True G62853
TU78391 other downstream 2797500 16792866 ~ 16793167 (-) True G62618
TU79413 other upstream 1715506 21312202 ~ 21312605 (-) True G63464
TU79676 other upstream 2947146 22543842 ~ 22544689 (-) True G63679
TU79847 other upstream 3557996 23154692 ~ 23161900 (-) True G63819
TU80215 other upstream 5080051 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 5514414 25111110 ~ 25112551 (-) True AMCG00020581

Expression Profile