RNA id: AMCG00020444


Basic Information

Item Value
RNA id AMCG00020444
length 2921
RNA type mRNA
GC content 0.42
exon number 11
gene id AMCG00020444
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 20300013 ~ 20310689 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTCAATAGGATATGGGCATTGACGTGGATGCACCGTTTATAGCACAGTGAATAGTGCTAGGCTGGAGCTTATACAGTATaagaatatatacacatatatttatttggttaaatCTGTATAGTCTTGAAGTTAACTCTTATTCACCggtaataattaattataagaaAAGCATATCACTTATTTGGGAATAGTCTGCTGCTTCTGTGTACATTGATGttagaatacatattttgtattttattttattgtcctcTCGCAACAAATTAAATCGTGCAAATGCATCGTTCTCCAGCAATTGCCAGGTCACTGGTCGGAGGTGTCTTGGACCGTTATACACCTTGGAAAACCTATCGCTGCTTACCTGCCTTGAGACTTAGACAAGGCACTGAAGTATGTGCAGTGCGCAGGCTGAGTACAGCTGAAGTCTCCGTAGTGAGCAGCGAAAATGGAAAGATCAGAGAAAAAGTATTGACGATGGAGACGCTGAATCCTCACATAGTGGCGGTGGAGTACGCAGTGAGGGGCCCGATTGTCATGAAAGCCGGGGAGATTGAAACAGAGCTACACCAGGGTGTGAAGAAGCCGTTTACAGAGGTCATTAAAGCCAACATTGGCGATGCTCATGCCATGGGACAACAGCCTATAACTTTTCTTCGCCAGGTGGTTGCTCTGTGCACGTGCCCAGAACTACTTGACAGCCCTGTGTTCCCAGAAGATGCAAAGATGAGAGCTCGTCGCATCCTGCAGGGCTGTGCGGGAAAGAGTATAGGATCTTACAGTGCAAGTCAGGGTCTGAGCTGTATCCGAGAGGACATTGCAATGTACATGGAACAACGAGACCAAGGTGTACCAACAAACCCAGACAATATTTATCTCTCCACTGGGGCCAGTGATGGCATTGTGagcATTCTGAAACTGTTAGTGACAGGAGAAGGGACCTCGCGCACTGGGGTGATGATTCCCATCCCTCAATACCCACTTTACTCGGCGGCCATTTCTGAGCTTGGGGCAGTGCAGGTGAACTATTACTTGGATGAGGATCACTGCTGGGCCCTGGATGTGAATGAGCTGCACAAGGCATTGAGTGCAGCCAAAAAGTACTGCAATCCCAAGGTGTTATGCATCATCAATCCAGGCAACCCAACAGGTCAGGTTCAAAGCAAGAAGTGCATTGAGGAAGTCATTAACTTTGCTTATGAGGAGAAACTTTTCCTTCTGTCTGATGAGGTTTACCAGGATAACGTCTATTCTCCAGACTGTCAGTTCCACTCGTTTAAGAAGGTCCTCTATGAGATGGGACCAGAGTATTACAACACTGTTGAATTGGCCTCCTTCCACTCCACCTCAAAAGGATACATGGGAGAATGTGGCTTCAGGGGGGGCTACATGGAGGTGATTAACCTTGATGCAGAGGTGAAAGCTCAGATGGTCAAGCTCCTCTCAGTCCGTCTCTGTCCTCCAGTGTCTGGACAGGCAGCCATGGATGTCGTGGTCAACCCCCCACGGCCTGGAGAGCCTTCTTTTGAGCTGTTCGCCAAGGAAAAGAATAGTGTGCTGAATACACTGGCTGAGAAGGCCAAACTCACAGAGAAGATCTTGAACACGGTCCCTGGGATCAAGTGTAACCCAGTGCAGGGTGCTATGTATGCCTTTCCCAGGATTTTCATCCCTCCTAATGCAGTTGAAGAGGCCAAGACATTAGGAATGCCCCCTGACATGCTGTATTGTCTACGGTTGCTCGAGGAGACTGGAATATGTATTGTGCCCGGCAGTGGATTTGGGCAAAAGGAGGGAACCTaccatttcagAATGACAATATTGCCGCCTACTGAAAAGCTGAAATTGCTCCTAGAGAAAGTCAAAGAGTTCCATATAAACTTTCTACAGCACTATTCCTCCCTGGATGCCACCTCAAGATGAAGAGAATTGGTTTAGTATCAAGTATTAGGGTTTACTCCAAGTTCTAGAAACAAAGGGCTCCTCGGATCAGTCTTGGACTAACGGATGTCAATTTATGTAGGTTAGTCCAGGATGAGTGCTAATCGAAGTTTATGAAACCAGCTAAAATAGTTTTAAGAGAATGCAAGTTATGTGTATTTTCCCTCGAATGTAAATATGAGTTCCATAGAAAAGCTGACACAATAGCTACTTATAATAGGACTTGTGTTTGAAAGACACTTGTGCCTTGTGACAAGGTGGGAAGGGGAAGCAAAAACCtcaagggaaaaacaaacatgcagcaTTTGAAACTGAGaaaccattcttttttttttctctgaagatGGTCTTCAGTTACGTCTGCCAAAACTTCACCAACAATAAGATGTCCATTTTAGTTGCCAACACAAattacaatctttttttttctacttcatATGAATTTGTACTTTAATGATCATGATTTTAAACGGGACCTCAGATAAAATGTGAAAGATGGTAGTGCCAAACAGTGTTCAAAACCTTACAACAATGTCCTTACAGAAGACAACCGTCTGGTGCTAAATctgttatacaaataaatcattgtatttattgatttgagtAACAAAATGAACTGGTTAATAAGAAGGATATTgggcatttttaattaatagtaTATAATGTAGTTCTTTTTCCGATTTATTTAGCACACATTGGTTCAAGAACCAGTCTCATGATGTCTCAGACTTTCATGatgaatacacaaaaacaatactgCACACAAAGTTAACCTCCaaattctattattttttctttgataaTATCCTACTGCAGAAgatgtgaaatacattaataaacaggGGACAGGATGCTTGTGGTTCCACAAGTATATAAGCATATTTATGTGCTGGAAAAAATGCATCCATGTGGTATTTTCTGATCTAaatgacatacagtgagggaaaaaagtatttgaacccctgctgattttgtacgtttg

Function

GO: NA

KEGG:

id description
K00814 GPT, ALT; alanine transaminase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79265 lncRNA upstream 48056 20248832 ~ 20251957 (+) True G63334
TU79257 lncRNA upstream 59087 20238830 ~ 20240926 (+) True G63328
TU79247 lncRNA upstream 102586 20197177 ~ 20197427 (+) True G63318
TU79242 lncRNA upstream 431731 19867785 ~ 19868282 (+) True G63313
TU79186 lncRNA upstream 645741 19653224 ~ 19654272 (+) True G63259
TU79295 lncRNA downstream 1010 20311699 ~ 20313272 (+) True G63360
TU79378 lncRNA downstream 253128 20563817 ~ 20580433 (+) True G63433
TU79397 lncRNA downstream 773428 21084117 ~ 21084538 (+) True G63448
TU79426 lncRNA downstream 1328307 21638996 ~ 21639656 (+) True G63477
TU79529 lncRNA downstream 1897019 22207708 ~ 22208031 (+) True G63562
AMCG00020445 mRNA upstream 39352 20255777 ~ 20260661 (+) True AMCG00020445
AMCG00020443 mRNA upstream 62372 20235596 ~ 20237641 (+) True AMCG00020443
AMCG00020442 mRNA upstream 467934 19826809 ~ 19832079 (+) True AMCG00020442
AMCG00020438 mRNA upstream 663846 19634387 ~ 19636167 (+) False AMCG00020438
AMCG00020439 mRNA upstream 697689 19597203 ~ 19602324 (+) True AMCG00020439
AMCG00020458 mRNA downstream 156699 20467388 ~ 20489997 (+) True AMCG00020458
AMCG00020459 mRNA downstream 190802 20501491 ~ 20526222 (+) True AMCG00020459
AMCG00020460 mRNA downstream 324177 20634866 ~ 20658252 (+) True AMCG00020460
AMCG00020461 mRNA downstream 350984 20661673 ~ 20672190 (+) True AMCG00020461
AMCG00020468 mRNA downstream 1720436 22031125 ~ 22047368 (+) True AMCG00020468
TU79182 other upstream 663792 19631325 ~ 19636221 (+) True AMCG00020438
TU79166 other upstream 699276 19597238 ~ 19600737 (+) False AMCG00020439
TU78921 other upstream 1965981 18332569 ~ 18334032 (+) True G63045
TU78779 other upstream 2227970 18067787 ~ 18072043 (+) True AMCG00020407
TU78775 other upstream 2238149 18058558 ~ 18061864 (+) True AMCG00020408
TU79495 other downstream 1824679 22135368 ~ 22142157 (+) True AMCG00020470
TU79558 other downstream 2048139 22358828 ~ 22372760 (+) False AMCG00020487
TU79808 other downstream 2759722 23070411 ~ 23074945 (+) True G63786
TU79994 other downstream 3741300 24051989 ~ 24053877 (+) False G63939
TU79996 other downstream 3741300 24051989 ~ 24055592 (+) True G63939

Expression Profile