RNA id: TU79287


Basic Information

Item Value
RNA id TU79287
length 1781
lncRNA type sense_over
GC content 0.36
exon number 5
gene id AMCG00020446
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 20288570 ~ 20299843 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAAAAGGCACCGTCTCAGTAGTTCGACATGCTGCACCCAGGCTGACAGCTGCAAAACAGATGTTTTAAGAGTTTGTTGTGAGAAAAGCGATGCAGCCTCCCTCTGTAGCACGCTGGGGTACAGATGAATATCAAGTCTGCATGGAGTAACACATTTATGCAGAGCCCAGATTCCTGTAGCATGCAAGTCGTGTCCCTGTGGCTATGTGTTCATTAGCCGAAAACTTCTCAATGCCAAACAAACCGAGAAATCGCCTCCAGCAATAGATAAATCAGACGCTAAGAGGAGAAGAACAGAAAGGATACGCAGAGAGAAAATCAACTCGGCTTCCACCAAAGACATGGAAAACCGAAAACGCTCTCGTTCAAACAGCCATTCGGAGCACATTCGCAGAGGAAGGGGGAGACCAAAGGCAGCATCCCATAAAaagcaagaagaagaaaaagaaaagcaagaaaaagaaatcGATATTTATGCCAATCTTTCAGATGAGAAAGCCTTTGTCTTTTCTGTAGCTTTGGCAGAAATCAACAGAAAAATCCTTGGTCAAAGACTCATCTTATAATAAGAATTTGTAATGGAGTGACCATGAAATGAAGCTACTCAGGACACATGCTGCAGAGACTTGTGAATGACCACAGAGGACCTAGCAGGGTGAATTGTTACCCACAAACCCCATCGTTATATGAAGGACTCAATCGGCCTACCAGTCTGGGCTGAGTATTTCTTGGGGACACTAACAGTGTGGAAATTGGGTATGCATGTGGATGCATATGGaactactatttttaaatgtttccaaagaATGAATTTAGATGGCATAAGAAatgcaaacctttttttatcagattttatatcaaatatattatgcattcaatatggcaaacacaaaaatggaatggaaccttttaaaaaatatgatgtaCTTGGGGGGGAACTTAATGAGAGTTCTGGTACTATAACAGTTTTAGTACTGataaaaaatcttaaatgtCAGAGGTTTACTCATGTATAAGGCCTTCTGTTTATCTTAAGATATAGATGCAGATGAGTTATGAAGTCTGAGATGCTTTTGTATAATGTTTAGATTTTGGGAATATGCCTTTGACGTTTATATTTATTAAGCCTGTAActtcttaatttaattgcatttttaaaattgttttcacAGTTAATTAAGcatacagattttgtttttaaaatatgtactcTGTACTCAAATAAATTTGAATGTCTAGATGCAATTATGTGAAGTTACCTTTAATGACTTGTAGAATGTCCGTTTGACGACAAGCTAaagttgttgtctttgtttaatCTTATCaacttcaaatatttgaattgtttaCCAAATACTGCCTACAGCAAAATGTTTATAAAGGTCACTGgatgttacagtacagtaccttCTGTAATTTACTTGAAAttccacatttgttttgaacaaaaaaaacaatgaaagaacTGATCATTCTAACTAGCACTTAAGTGCAAAAATCTCTTAATTGTAATAGAAAATCAGTCTTATCAGAAGGTTATGTGAATTTTCTTAGGAAATGcaagtatgtatgtgtatttttaaaccgtgcaacagaaaaaaaaacacatgcattttattattctttagaCAGACATACATTTCTGGCCACACTAAGAATTTTATTTCCCCTTCAcaataaatctgttttaattaaaaagtattctGTAACTTTGCATTcttatgttggtttgtttgcagTTCGCTCAAATTCATTGCTTTTGGTCTTCTGTAAATGTGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79277 lncRNA downstream 32304 20255922 ~ 20256399 (-) True G63346
TU79184 lncRNA downstream 652460 19634294 ~ 19636243 (-) True G63257
TU79099 lncRNA downstream 1210945 19077477 ~ 19077758 (-) True G63180
TU78982 lncRNA downstream 1851764 18436525 ~ 18436939 (-) True G63096
TU78976 lncRNA downstream 1889972 18397467 ~ 18398731 (-) True G63092
TU79396 lncRNA upstream 783419 21083262 ~ 21083461 (-) True G63447
TU79510 lncRNA upstream 1831159 22131002 ~ 22132737 (-) False AMCG00020471
TU79512 lncRNA upstream 1831159 22131002 ~ 22131959 (-) False AMCG00020471
TU79614 lncRNA upstream 2082521 22382364 ~ 22384918 (-) True G63628
TU79616 lncRNA upstream 2083674 22383517 ~ 22391215 (-) True G63629
AMCG00020454 mRNA downstream 12234 20263295 ~ 20276469 (-) True AMCG00020454
AMCG00020447 mRNA downstream 33487 20238327 ~ 20255216 (-) True AMCG00020447
AMCG00020449 mRNA downstream 62426 20215104 ~ 20226277 (-) True AMCG00020449
AMCG00020453 mRNA downstream 581496 19706484 ~ 19707207 (-) True AMCG00020453
AMCG00020448 mRNA downstream 596028 19689373 ~ 19692675 (-) True AMCG00020448
AMCG00020452 mRNA upstream 19836 20319679 ~ 20327023 (-) True AMCG00020452
AMCG00020451 mRNA upstream 32844 20332687 ~ 20354695 (-) True AMCG00020451
AMCG00020463 mRNA upstream 63267 20363110 ~ 20366992 (-) True AMCG00020463
AMCG00020462 mRNA upstream 163361 20463204 ~ 20464258 (-) True AMCG00020462
AMCG00020464 mRNA upstream 241675 20541518 ~ 20559873 (-) True AMCG00020464
TU78822 other downstream 2248743 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 2272843 18006168 ~ 18015860 (-) True G62961
TU78823 other downstream 2291686 17994544 ~ 17997017 (-) False AMCG00020403
TU78680 other downstream 2662514 17610664 ~ 17626189 (-) True G62853
TU78391 other downstream 3495536 16792866 ~ 16793167 (-) True G62618
TU79413 other upstream 1012359 21312202 ~ 21312605 (-) True G63464
TU79676 other upstream 2243999 22543842 ~ 22544689 (-) True G63679
TU79847 other upstream 2854849 23154692 ~ 23161900 (-) True G63819
TU80215 other upstream 4376904 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 4811267 25111110 ~ 25112551 (-) True AMCG00020581

Expression Profile