RNA id: AMCG00020450


Basic Information

Item Value
RNA id AMCG00020450
length 2086
RNA type mRNA
GC content 0.36
exon number 6
gene id AMCG00020450
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 19652823 ~ 19656766 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTCCATGGTTGTGATCCGGTTTTCTGTAGTAGTGTGAGTTATATGGATAGATTGCACAATCAACTGTTTGCACTGTATTtcagtaaataatttaaatgttttaaattaaataacatacaaGCAAATCTGGTAATATATTGCCTATACACTATATGTGTAGTGTTTATATGCATATGAGAGAGAAATACGTTTTGCTTTCTAAAATTCTTGTCAGTGAggcattttaaatctgtatattGGTAGATAGACAAAAGCCACACAAGCTACTATTTGCCTTCACCAGCATAATGGCTTGCTAATGGATTTATCCGGATGATTTAACACTCCTTAAAAGCGATTTATCGTTTCTCTACTGCTCTGGTCTGTAGTACGTAACTGCGTGGCGGAAGTCTTTCCCGCAAGCACGTTGTGTGGAGTAACTTTACGTGTTTAGTGGCTGAAGTAAAGGGGCGAATAAAGCAATGGAGCGTTTAATACAATCCGGTTTACCAGAGGATCAGGCTCATATTCTGGAAATCCAGTCTCAGGATGTCAATCAGGCACAAGCCTTCACGGatgcttttctgaaaaacaGCATGCCGCTCAAACAAGAGgaaatccagcaggttttggttCACAAGGCGGTAGTACTTGAATATTTCgtcaagaaaacacagaagaaaaagatgAAGAAGGCAAAGGGTCTCAATGCCAAGCAGAGAAGGCAAATGAAGATATTTGATCTAAGGCCAGAGCAACAGAAcaatCCTCAGATGATACAGAATAAGTTACTAAAGGCAGATTTCCACGGTGCTATTATTACAgtGGTCAAATCTAAATGTCCATCTTATGTGGGCACAACAGGAATCCTTTTACAAGAACTGAAGCATGTGTTCAAAATTATTACTCAAGAGGACAAAGTAAAAGTTATCCCAAAGCGCAACAGTGTGTTCAGCGTGGAAATTGATGGTTTTGTGTCCCATATCTATGGCAGTAAGTTCCAGCTCAGATCAAGCGAGCGCTCTGCGAAGAAATTTAAAGTGAAAGGAACCATAGACCTTTAATTAAGAGCCAATGTAGCTGAAGAAGCTCCTTCAGAAACATCACCAGTTGCTCCACAGAGACTAATGGGAAGAGTTTTGCAGCTGCCAGATAGGATATAAAAGGAGTTCAGCTTCTCGGAAAAGCCTATTGATTAGCTCGTCTCTGGAGAAAcatcttcttttcctttttttttatatagaaagTCATTCAGTTCCtttatgcttttaatttctcCAGTTTAATGCTAATCAGATTATATCTAACGAGGATGCATTGGCAAATAGGCATTACTGTTCAGACCATTTAAATTAACTCTGcctctttcaaaatgtactgGCGCAGGGGTTTTGAGAAAAAACGTGAACTGCTTGTAAGTAGTTAAGTAGGTCACGTGAAATCTGACCATTAGATCTGGATTGATTTATGTCGTATCCTGCTCTAATGTTTTGAACTctttacttgtgtgtgtgtgtgtgtgtaaatattattttttggaagaggtttatattttactgtttacAATCACTTCCTTGGTTGttcagttacaaaataaaagtgtaacaATCCACAATGATCCTAAGGAGAGACCTGTTCTAAGGAGTCTTACATGTCAGAATGCTTATAAAACttgaaaaactgtaattttgtttttaataaaaatgcttaCTACTCAATAGTAAAGTATTCCAGCTTTTCTCATTTACAGAATgtacacagcaaaatctgtagttttgaaatcccagtgttaacaatatagtgttaaaatcagtgttgtttcaacactaaaaagattcagttgacactttgagagttaaaccatcttgagagtcagtgttaataccgggtgtcaaattaaagagtgttgattttacactgtactggtgtaaaaccaaagaatttaccatacccacaatgcattgtggtagtttcctgaataattgtttttttatggttttattttttttcttaataattgtataaataaatgttaatgttaatgattgtacattaattattgtttgagggtaaaatgtacccaccaatgtatttatatttgtgttg

Function

GO:

id name namespace
GO:0034470 ncRNA processing biological_process
GO:0030677 ribonuclease P complex cellular_component

KEGG:

id description
K03538 POP4, RPP29; ribonuclease P protein subunit POP4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79184 lncRNA downstream 16580 19634294 ~ 19636243 (-) True G63257
TU79099 lncRNA downstream 575065 19077477 ~ 19077758 (-) True G63180
TU78982 lncRNA downstream 1215884 18436525 ~ 18436939 (-) True G63096
TU78976 lncRNA downstream 1254092 18397467 ~ 18398731 (-) True G63092
TU78936 lncRNA downstream 1293913 18357825 ~ 18358910 (-) True G63057
TU79277 lncRNA upstream 599156 20255922 ~ 20256399 (-) True G63346
TU79287 lncRNA upstream 631937 20288703 ~ 20299843 (-) False AMCG00020446
TU79396 lncRNA upstream 1426496 21083262 ~ 21083461 (-) True G63447
TU79510 lncRNA upstream 2474236 22131002 ~ 22132737 (-) False AMCG00020471
TU79512 lncRNA upstream 2474236 22131002 ~ 22131959 (-) False AMCG00020471
AMCG00020456 mRNA downstream 6311 19645694 ~ 19646512 (-) True AMCG00020456
AMCG00020457 mRNA downstream 26687 19623185 ~ 19626136 (-) True AMCG00020457
AMCG00020455 mRNA downstream 45914 19600942 ~ 19606909 (-) True AMCG00020455
AMCG00020441 mRNA downstream 56127 19590667 ~ 19596696 (-) True AMCG00020441
AMCG00020440 mRNA downstream 81983 19552958 ~ 19570840 (-) True AMCG00020440
AMCG00020448 mRNA upstream 32607 19689373 ~ 19692675 (-) True AMCG00020448
AMCG00020453 mRNA upstream 49718 19706484 ~ 19707207 (-) True AMCG00020453
AMCG00020449 mRNA upstream 558338 20215104 ~ 20226277 (-) True AMCG00020449
AMCG00020447 mRNA upstream 581561 20238327 ~ 20255216 (-) True AMCG00020447
AMCG00020454 mRNA upstream 606529 20263295 ~ 20276469 (-) True AMCG00020454
TU78822 other downstream 1612863 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 1636963 18006168 ~ 18015860 (-) True G62961
TU78823 other downstream 1655806 17994544 ~ 17997017 (-) False AMCG00020403
TU78680 other downstream 2026634 17610664 ~ 17626189 (-) True G62853
TU78391 other downstream 2859656 16792866 ~ 16793167 (-) True G62618
TU79413 other upstream 1655436 21312202 ~ 21312605 (-) True G63464
TU79676 other upstream 2887076 22543842 ~ 22544689 (-) True G63679
TU79847 other upstream 3497926 23154692 ~ 23161900 (-) True G63819
TU80215 other upstream 5019981 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 5454344 25111110 ~ 25112551 (-) True AMCG00020581

Expression Profile