RNA id: AMCG00020454


Basic Information

Item Value
RNA id AMCG00020454
length 2725
RNA type mRNA
GC content 0.45
exon number 11
gene id AMCG00020454
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 20263295 ~ 20276469 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAAAACGGAACAAGTGGGAGATAACATATCAAAGCAGAGGTGTTTATTTAAGTGGTGTCATGCTACTGGCACAAAGAGATCAGTCCCGACTCAACTGATTTGTTGCATGAAGAACTTTGACACCCAGAGGGctgaaaatacatgaaaaaaaaataaagacataggTAAAGGACAGTTAATGGTATAGTGAGAGGTAGACATCTTGCTTCTCTCATTCGTCTATTGAATTTCAGTGCTTTTGGTTTGTTACAGCCTGGAAAAATGAGTAAACCAGTGTCTTTAGCCGCTTGCATCGCTAAAATGTATGAAGGGGGGAGGCGGGATAGTGCGGGGAGTTCAGGAGCAGGGACTCCGGTCAAAAAGCCCAACAGCAGTGTAATCAACAACTTAAGCTCCATGGACATCAAACTGAACCTTCTGGATGCAAAAGTGGAGAAGATTGTGAACAGCCAAGGAGAGGTCTTGAAGAAACTAGATGTAGTTTATCAAGGCATTGGTGACCTGGGAAAGGACATGGCCAGACTGAAGTTATCAAATGAGCCCAGCATTGCTGAGGAGAATACCAAAAAGTGTGACTCTGCTCCATTTTCTGAGATCAAAGCTCTGTGCAGTGAATCTGTGAAGCTGTTGAAATCTCTGCAACAggacagcaaaaaacaaaaggagaaaatTGATGGCATTGAGCTCTCATTCTCTGTCGTAGACAAAGTAATTAAGTTTGTGGGTGAAACATTCAAACGCTCAGAAATAGTGGAGTATATCCTCAGGGGCACTGTGCCCTGGAGGAAAGACAGTCTTCTCGAGAGTAACGAAGAGaAACCAGACAAAACAGAGGAAAGAGGTGCAAAACCCAAAGCTAGATTCTGCAATCGAGCAATTCAGGCTGAGACCAGGATATCTTTGGAAGATGACAGGGGAAAGGAGAAAGCCCTCAGCAAACCAGTGGAAAGAGCAAATATAGATTGTACCACACCAACTCAGACACCCTGCCAAGCAGTGAAGGATTCAACTAGTCTTGGGGCCCAGGCGACAAACCAAACAAGTGGTCCAGAGAATGCAGACGATTTGCATCCCTTACCAGTACTGGACAAGCCTTCCATTTACAATTCCGGAAATAAACCATCCTGTAAACTCAAGGAAGTTTCCAACCAAAAAAGAGAACCCATACAAACTCAGACCTTGATTAAAGACACTCAAAACATTGGGTTGAACACAGAGGACCAGTATGGGACTGAAGAGGCTGAAGGCGGCCACATCTGTGCAGTAGCTGGAGGATCTGAAAGAGATGTATCTGCAGCAACTGAAAATGGACGCCATAAGTCTGCAGCAACAGCTCTGGAGAGAATCCTTGACACACCCGAGGGCAGCCCTGATACAGGATTACAAATTCTGGAAGCTTCCGACGATGAAACACTTCAAGCATCGCCATTCTCCGTTCAACCACAGCAACCCGCTGTGgaggacaagaagaagaagaagaacaccAGAGAGCGACGTAAATCCTCAAAAAGTTCTGTGCCTTTACCAAAACACAAGGAAGCTGAGTGTAAGCCACATGTTAAAGTTGTTGTTGCCGTGCAGAAGACGGTGTCTCCAGCCAAACAGCAGGAGGAACAAAACGCCCCGCAGGCATTCAGTGCCAGTGGACTGCAGAAAGACAACAGCACGACCATAGAAATTAAGGCTGAAAAACTGCCAAGTCAGCCCCAAAGTGAGCCAATGCAGCTTCTACCCGCGGGTACACATCAAACTGAACCCGACAAGCTGGGTGAGAAGCTGGGTGAGAAACCTGAGGCAGCAGACAACACTGAGATACAAGCCAATAAGGAGACCACTGGGACTAATCCACCAGCTGTAGCAAAGTCTCCAGAGCCCCAGCTAGTTGTCATTGATGACAGCCCTCCCTTGCCTGCACCTTTTGAACATCGCATTGTAAATGCAAAGCAGCTTCCAGTTAACTCGTATTACACGGTGAAACAAAATGAAGTGCTAGGAGGGGGACGTTTTGGACAGGTTCTCAAGTGTGCAGAGCTTTCATCTGGACTCACACTGGCTGCCAAGATAATAAAAGTTAAAGGCTCAAAGGATAGGGAAGAAGTCAAGAACGAAATTGGTGTCATGAACCAGTTAAATCATGTCAATTTGATCCAACTCTATGATGCCTTTGAATCCCGGAACAACCTCACATTAATCATGGAGTAtgTGGAGGGAGGAGAATTATTTGACAGAATCATTGATGAGAATTATCAACTCACCGAACTGGATGCCATTGTGTTCACACGGCAGATCTGTGAGGGAGTGCAGTATCTGCACCAGCAGTATATACTCCACTTAGACCTCAAGcctgaaaatattttgtgtgtaaaccatacaggaaatcaaatcaaaataattgactTCGGACTTGCGAGAAAGTACAAACCTCGCGAGAAGCTGAAAGTTAACTTTGGCACACCAGAGTTTCTAGCACCAGAAGTGGTGAACTACGATTATGTTTCCTTCCCTACTGATATGTGGAGTGTGGGAGTCATCACATACATGCTGCTCAGTGGGCTTTCTCCTTTCCTGGGAGATAATGACACAGAGACCATGAACAACATCCTCCATAGTAACTGGGAGTTTGACGTggatgcttttgaaaatgtctcCGCTGAGGCCAAAGACTTCATTTCAAGGCTGTTGATCCCAGAGAGATGGTATTATGCCTTTCCCTCTTTGTACTAG

Function

GO: NA

KEGG:

id description
K00907 MYLK; myosin-light-chain kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79277 lncRNA downstream 6896 20255922 ~ 20256399 (-) True G63346
TU79184 lncRNA downstream 627052 19634294 ~ 19636243 (-) True G63257
TU79099 lncRNA downstream 1185537 19077477 ~ 19077758 (-) True G63180
TU78982 lncRNA downstream 1826356 18436525 ~ 18436939 (-) True G63096
TU78976 lncRNA downstream 1864564 18397467 ~ 18398731 (-) True G63092
TU79287 lncRNA upstream 12234 20288703 ~ 20299843 (-) False AMCG00020446
TU79396 lncRNA upstream 806793 21083262 ~ 21083461 (-) True G63447
TU79510 lncRNA upstream 1854533 22131002 ~ 22132737 (-) False AMCG00020471
TU79512 lncRNA upstream 1854533 22131002 ~ 22131959 (-) False AMCG00020471
TU79614 lncRNA upstream 2105895 22382364 ~ 22384918 (-) True G63628
AMCG00020447 mRNA downstream 8079 20238327 ~ 20255216 (-) True AMCG00020447
AMCG00020449 mRNA downstream 37018 20215104 ~ 20226277 (-) True AMCG00020449
AMCG00020453 mRNA downstream 556088 19706484 ~ 19707207 (-) True AMCG00020453
AMCG00020448 mRNA downstream 570620 19689373 ~ 19692675 (-) True AMCG00020448
AMCG00020450 mRNA downstream 606529 19652823 ~ 19656766 (-) True AMCG00020450
AMCG00020446 mRNA upstream 12101 20288570 ~ 20295692 (-) True AMCG00020446
AMCG00020452 mRNA upstream 43210 20319679 ~ 20327023 (-) True AMCG00020452
AMCG00020451 mRNA upstream 56218 20332687 ~ 20354695 (-) True AMCG00020451
AMCG00020463 mRNA upstream 86641 20363110 ~ 20366992 (-) True AMCG00020463
AMCG00020462 mRNA upstream 186735 20463204 ~ 20464258 (-) True AMCG00020462
TU78822 other downstream 2223335 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 2247435 18006168 ~ 18015860 (-) True G62961
TU78823 other downstream 2266278 17994544 ~ 17997017 (-) False AMCG00020403
TU78680 other downstream 2637106 17610664 ~ 17626189 (-) True G62853
TU78391 other downstream 3470128 16792866 ~ 16793167 (-) True G62618
TU79413 other upstream 1035733 21312202 ~ 21312605 (-) True G63464
TU79676 other upstream 2267373 22543842 ~ 22544689 (-) True G63679
TU79847 other upstream 2878223 23154692 ~ 23161900 (-) True G63819
TU80215 other upstream 4400278 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 4834641 25111110 ~ 25112551 (-) True AMCG00020581

Expression Profile