RNA id: AMCG00020455


Basic Information

Item Value
RNA id AMCG00020455
length 2163
RNA type mRNA
GC content 0.35
exon number 3
gene id AMCG00020455
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 19600942 ~ 19606909 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCAGGACAGACCCGCTATCTGCCGAAAAGAAAGATCCACTGGAGCAACCAGAGATCAACCCCTTGGAGAACCTACTGATTGAGCATCCTAGTATGTCGGTGTACAACCTGAGAGACTGGGGAAGTGATGAAGAGGACCTGAACTCtgaggaggaagatgaagatTCATCAAGACTTGTCCAGGTGGGACGTTTCATTCCGTGGCGGTTGAGCATGTGGGAAGTTTCTGTGGAGAAAGACAGTCCCCTGCACTGTATCCGCAGGGCCAGGCAGCACAGTGAGCACAGGAAGCTGAGCCGCGGTCACCTCTGCAGGCAGAATCGCTGCAAGAAGCGCTACTCTCCAAGAGAGAAGCACTACGGCTGCTTCAAGCAACCCTGCCAACGCATTTATAACTACTGAGAACTGGAGCTGGGAGAGAAATTGGGGATTTAGATGAGACGGCAATGtataattgatttgtttataaatgcatataaaccTGTATATTTTCAACAAAAGTCATAAATCATGTTCATACTTTCTGTATTCCAAGGTACAGTGTAATTtgcctgttttgtgtttgaactAATGCAAAATATACTGTACCATCTGTACAGTTTCATAACTACTTGATATTACTGACAAGCTTAGAGAACACATGGCCACTAAGAACTAAAAccagaaaaaattataaatattcagtgttgactctctctatctatacacaataaatatatatatatatatatatatatatatatatatataaacttattttattattacatgtgAAAACGAAACTACACCTATAGAATCATATAAATTGCTACCTAACTTGCATGTACAACCTGTTTTAGGAAATTACTTGATAAAGAATGACAGTGCTGCCTACAGGTGGTATTGTAACAGGTAACATGTTTCAGTGTTGTAGTTGACTACAACTGGCTGAACTTgtcttattttccatttcagtggTCTCTTGACTACAAGAAGAAATCCAAAGTGcctaatacattaaataattaggaATAGTCTCATCACGGAATATTGGGAATGCTAATTGTACACATTGAGCATAGCACATATTTAACACGATTTTAGATGCAGGAACAAAACTTCTCTGCACACTTTTCTATCAGTATAAAATGGCGAATGGAATTGTGCTCGGCAGCAAACGCAGGACTCACTACAtcactttcattttgatttacattttcaccACAGTCAGGAACTCAAGTGATATGCACCTCAAAGGAATTACAGATCATtttgacaattatttttaaatgtcacaatgcaAGACACAATTAAATTCAACTGAAAGAAGATTGTGTGCACAACTATAGTGTACCAGCTGTATCATAAAAATTACAACAGGTATTGCACAGATatgatttgtgcattttaaaactgcaaattaaGGCTTTCAACTTTGccaattgttttaatctgttacACACTAGCATTATGAGGATTTATGAAAATTAAAGAAGACCTGCATATTcccatatatttatacatttaaagtcCTGTAATTCATAGTACTGAAAAAACATCCCTTTAGGTTGGTTTTTTTCTAAGCAAAACTTTATACTGTTTAGTTTTGACATGGGAGTACCCTTCAGAATAGTTTTGGTTCATTCTAGTACCATTTATCAGTTGTTTTTCGAGCTGAAGACCATTCTACATTACAATACTGTAGGTTTggtatataacaaaataatatatatctatacttAAAAGTAGATGTACAGGTGTGTTTCTTCTTTGGGACATAATTGTTCAAATGTAGCTGTATTCACATATAGAAAACCTTGATATGTTGCTGCAcgtgtaatattatttttgttcttcagCTGTTAGCGTGCAATCATTGCTGTACTATTAGATAGTACAGACAGACTGTCAagagtgcatgtgttttgcCTGAATTTGCTGTTAGGAATATGAATGGAAGAGAAAGCTTTCACTTGTGACATTGtggttatttagtttttttattctattacaatagcactgtattttaaatggatgtTACTTAAATGTGTTGTTCTACTATATTTATAGACTCCAAAATcagtttgtaaaaatgttaacaatactttttttagcATAGAATGGGGGTGGTATAAAAATTTTGAgtactatacaaataaatcactttttgttaaaaaaaaa

Function

GO:

id name namespace
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process

KEGG:

id description
ko04020 Calcium signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79099 lncRNA downstream 523184 19077477 ~ 19077758 (-) True G63180
TU78982 lncRNA downstream 1164003 18436525 ~ 18436939 (-) True G63096
TU78976 lncRNA downstream 1202211 18397467 ~ 18398731 (-) True G63092
TU78936 lncRNA downstream 1242032 18357825 ~ 18358910 (-) True G63057
TU78888 lncRNA downstream 1414892 18184008 ~ 18186050 (-) True G63015
TU79184 lncRNA upstream 27385 19634294 ~ 19636243 (-) True G63257
TU79277 lncRNA upstream 649013 20255922 ~ 20256399 (-) True G63346
TU79287 lncRNA upstream 681794 20288703 ~ 20299843 (-) False AMCG00020446
TU79396 lncRNA upstream 1476353 21083262 ~ 21083461 (-) True G63447
TU79510 lncRNA upstream 2524093 22131002 ~ 22132737 (-) False AMCG00020471
AMCG00020441 mRNA downstream 4246 19590667 ~ 19596696 (-) True AMCG00020441
AMCG00020440 mRNA downstream 30102 19552958 ~ 19570840 (-) True AMCG00020440
AMCG00020435 mRNA downstream 162505 19323395 ~ 19438437 (-) True AMCG00020435
AMCG00020437 mRNA downstream 284797 19314795 ~ 19316145 (-) True AMCG00020437
AMCG00020433 mRNA downstream 685431 18908978 ~ 18915511 (-) True AMCG00020433
AMCG00020457 mRNA upstream 16276 19623185 ~ 19626136 (-) True AMCG00020457
AMCG00020456 mRNA upstream 38785 19645694 ~ 19646512 (-) True AMCG00020456
AMCG00020450 mRNA upstream 45914 19652823 ~ 19656766 (-) True AMCG00020450
AMCG00020448 mRNA upstream 82464 19689373 ~ 19692675 (-) True AMCG00020448
AMCG00020453 mRNA upstream 99575 19706484 ~ 19707207 (-) True AMCG00020453
TU78822 other downstream 1560982 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 1585082 18006168 ~ 18015860 (-) True G62961
TU78823 other downstream 1603925 17994544 ~ 17997017 (-) False AMCG00020403
TU78680 other downstream 1974753 17610664 ~ 17626189 (-) True G62853
TU78391 other downstream 2807775 16792866 ~ 16793167 (-) True G62618
TU79413 other upstream 1705293 21312202 ~ 21312605 (-) True G63464
TU79676 other upstream 2936933 22543842 ~ 22544689 (-) True G63679
TU79847 other upstream 3547783 23154692 ~ 23161900 (-) True G63819
TU80215 other upstream 5069838 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 5504201 25111110 ~ 25112551 (-) True AMCG00020581

Expression Profile