RNA id: TU79495


Basic Information

Item Value
RNA id TU79495
length 2583
RNA type TUCP
GC content 0.36
exon number 5
gene id AMCG00020470
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 22135368 ~ 22142198 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTCAGTTTGGCTGCATCCCTCCAACTTAACCGTCTCCAGATTTGCAGAATGCAGATGTTGCATTTCTTTTACGTTTCCGCAGTGTCACGATTTCCGTTTCCAGCTTAAATTCAGAAAAAACAGATTCATTTAAAGTTTGAAGTCGCTAgactacttttttttcttttaggaaAACTTTTTTGCAGTACATAAACTTCTGTTTTCCCTATTTTTAACCGGCGCGATGGGGGACATAGAAGCTCCCGAGTCGACTGCCGCACCGCAGGCTGCTATCAGAGCTCTTCTCCCGGACAAAGCTTTCGTCACCTCTCGGAAAGGGCAGCTGCTTATAGCTGAAGtgGCTCTGTGTTTCATCACCTTCATCTGCTTTGTGGCGTCGTCAGCCGCAGCCTTTGTGACGGCTCCTCTGGTGGAATTTCTCATGGCCTTCTTCCTGCTCTTCGCCTATTCCACCAAGTTTAATGAGCGATTCAAGGGCTTCCACTGGCCACTCATGTCTCCAGGTATACAGATGCGGCATCAAAGGCAGCTGGGGTGTTTGGGTTTGTGGCCACTATAGTTTTTGCGTTAGACTTTTATGTCATCTTTAACGACCTGGCTAATTTTCTGAAGCAAGGGGGGGACTCCACAGAACCACCTCAGACAGGTAGGCAAGATGAAGATTCGGACTCAGATTCTGACTGAATAAATGGGACCCCTGCTTATAACTGTTGACACCACTTGACAAGAACACACCAGACTGACCATCAAGATTGGAAACTCTCCAAAAGAAGCCTAAAAAGAGGTCCATAagtatttgacattttacatcGAATTGATATAAAAATCTGTTTCTAAGTACTGCTCTGATACTATGAAAGCATTCATAATAGGGCCATGAATCCATGCACAGAGgtagtaaaacattttataaaaggctttatgtttttttgttttaaatacatgcttGATTCATAAGCTCtttgaaattacttttgtttgGTTGTAAATCATGATATAGTATGTccatttttgtagttttgatttttatgtttaaagccATTGTGTGGGGGTTGGAAAAAACACTAATTTtcaaattgtatacatttgaatttttaGGAGAATCCTTTCATAGATTACAGTTTCTTGGGAGGTTTTTTTTCCAATGATAATGTTATAAAACAACAGTGCTTTAACCTCATGTCTGTGTGGGCATTTATTTGCCAGCCacattcataatatttttttttatgtacaaaataattatacttgTATCAAAGAAAAGGGCACCTATAATATTTTTGGACATATTGAAAGTtcaaatgtataacattttctaTTGTACAAAACTATGTGAAAATAAGAATGTATCCAGAAATAGTTTCAGAGGTTGTTTGgaagaaacatacatttttgctGTTGTATCTACATATTATACATACTCACTCACATTACATAACATAATGTACAGAATACCCACTTTTCACATTCGAAAGACTGCAGTGAATTTTAGAAtaacaaatgcacacatcttCTCATAGGATGTGGTGGTGTTGAGCtttgcagaataaataaatattgttaatagtAAACTAATTGAAATCTATACATggaaataaagtgtaaaaactGCCTCTGAACAGAATTCCTTTAGCAGCTGGTGTGCTGGTTTCACCATCTGCACATGATCAAGACTGGAATTTAACCCAGGCTTAAGAATTAATTAAACTTAGAATATTTGACAAATGTTTTAGCCTTTTAGCCTTAATGAATGCAGCTCTGTTAAGATTTATAGCTTGACTCATGcaattaattgctttatttctaGGCACAGTTTCTACTGCAAATGTATACACGGgttgttaaaatacatatttaacaactGACCTGCACTCAGTGTGCTGCCTTTAACTACCTGCTATACAGGTAGAGCCCTTaatattcaacatttatttccagATACAGCCTTTAAAGCTGTATTTCATGGTCATGTACTTTCTATACATACTTCATACTTTATCCATTCTCTGTAGACTATTTgactaaatgtaagaaatcatgCTGAAAATTAGGTGATTGTACACTGTGTTCACTTAAAATGGGTACAATTACCTTGATATaaacattaattgttttgtgGGCTGGGGCCATCACTAAAGGGACAGACAACTGCACTTGACTGACTGTGAATGACAACATTCTTACTTGTCAATTaagaaatgttgaaataaaaattgtttaaaggcaggcaggttttaaaaaaacaacaacaggattTTAGATGGTGGATATGAAGTAGTTTTGCCAATgctgatgtgtatatatatgcagattttttttttttttttttttttcctcgaTGGGAAAAGTACCACTAGTGATAATATATCATGTTTATACCTGCTAGGCTACACCTGTGGTTATAAGAGTGCATTCAAGTTCCACAGTAGGCTGGAAACAGAAAAGTGCTATatgttgtgatttattttcaagactACTTCTTCCAGACTGCCATCCTCAATTATGTTCTGTCCTGACTGTGCAGTATTTCTTCAAATCCATCATAAAACTGATTGTTAGAAAGAGTCTTGTCTTGTAATTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79426 lncRNA upstream 495712 21638996 ~ 21639656 (+) True G63477
TU79397 lncRNA upstream 1050830 21084117 ~ 21084538 (+) True G63448
TU79378 lncRNA upstream 1554935 20563817 ~ 20580433 (+) True G63433
TU79295 lncRNA upstream 1822096 20311699 ~ 20313272 (+) True G63360
TU79265 lncRNA upstream 1883411 20248832 ~ 20251957 (+) True G63334
TU79529 lncRNA downstream 65551 22207708 ~ 22208031 (+) True G63562
TU79532 lncRNA downstream 210016 22352173 ~ 22382491 (+) True G63564
TU79565 lncRNA downstream 211861 22354018 ~ 22354979 (+) True G63589
TU79568 lncRNA downstream 241360 22383517 ~ 22391241 (+) True G63592
TU79791 lncRNA downstream 831721 22973878 ~ 22974091 (+) True G63772
AMCG00020467 mRNA upstream 14289 22117853 ~ 22121079 (+) True AMCG00020467
AMCG00020469 mRNA upstream 38328 22094318 ~ 22097040 (+) True AMCG00020469
AMCG00020468 mRNA upstream 88000 22031125 ~ 22047368 (+) True AMCG00020468
AMCG00020461 mRNA upstream 1463178 20661673 ~ 20672190 (+) True AMCG00020461
AMCG00020460 mRNA upstream 1477116 20634866 ~ 20658252 (+) True AMCG00020460
AMCG00020473 mRNA downstream 48430 22190587 ~ 22197292 (+) True AMCG00020473
AMCG00020474 mRNA downstream 83744 22225901 ~ 22241448 (+) True AMCG00020474
AMCG00020479 mRNA downstream 108505 22250662 ~ 22252251 (+) True AMCG00020479
AMCG00020481 mRNA downstream 192567 22334724 ~ 22346329 (+) True AMCG00020481
AMCG00020480 mRNA downstream 204197 22346354 ~ 22350406 (+) True AMCG00020480
TU79182 other upstream 2499147 19631325 ~ 19636221 (+) True AMCG00020438
TU79166 other upstream 2534631 19597238 ~ 19600737 (+) False AMCG00020439
TU78921 other upstream 3801336 18332569 ~ 18334032 (+) True G63045
TU78779 other upstream 4063325 18067787 ~ 18072043 (+) True AMCG00020407
TU78775 other upstream 4073504 18058558 ~ 18061864 (+) True AMCG00020408
TU79558 other downstream 216671 22358828 ~ 22372760 (+) False AMCG00020487
TU79808 other downstream 928254 23070411 ~ 23074945 (+) True G63786
TU79994 other downstream 1909832 24051989 ~ 24053877 (+) False G63939
TU79996 other downstream 1909832 24051989 ~ 24055592 (+) True G63939
TU80130 other downstream 2336678 24478835 ~ 24482114 (+) True G64046

Expression Profile