RNA id: AMCG00020472


Basic Information

Item Value
RNA id AMCG00020472
length 1613
RNA type mRNA
GC content 0.37
exon number 9
gene id AMCG00020472
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 22121669 ~ 22128173 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTTCTTCCATAGATAAACTACTGAGGAACGGGGAGCAGAGGAAGTCCGTTatttgtattgaaGGGAACATTGCCAGTGGGAAGACAACTTGCTTGGAATATTTCAGCAAAACTAGTAACATTGAGGTGCTGACTGAACCCATTTCCAAATGGAGAAATGTTCGAGGCCATAACCCACTGGGGCTGATGTACCAGGACCCCTTTCGCTGGGGGATTACCCTGCAGACCTATGTGCAACTCACCATGCTGGACCGCCACATCTCACCCATTATGTCTCCTGTGCGAATGATGGAGAGGTCCATATACAGTGCCAAGCATATATTTGTGGAAAATCTCTTTCGaagTGGGAAGATGCCTGAGGTGGATTTTGCTGTTCTAAGTGAATGGTTTGAGTGGATCGTGCTGAACATTGACATTCCCCTGGATCTTATTGTTTACCTGCAGACCTCTCCAGAGACCTGCTATGAGAGACTGAAGAAGAGATGTAGAGAAGAGGAGAAAGTGATTCCTATGgaataccTGGAAGCTATCCACCAGCTGTATGAAGACTGGCTAATTAAGAAGACTTCATACAAAGTTCCTGCCCCAGTTCTTgtTATTCCTGCAGATCAAGATGTTCAGGTGATGCTGAATCAGTATGAGGAGAATAGGGAAAGGATTTTGGCAGCTAACAACATGTAatttaaagagagagaacatgTACAGGAAAGCTGGGAGACGAAACAGGGGAGCTCTCACAGCTTGTGTTCAATGATGGACAGCTGTTCATTGGCcatttaaatcatgatttttCTGCTGTGTATAAGCTGTTCTCGGTAACATTAATTTACAcactattttaaagttttgtttttcatgacacctgatttttttaatacacaaatagCACTTAAAGTTACATGACTTCTCAGACTCTTATCCAGCaactttttatctttttatatgtatgttgGCACTTTGGGAACATTGTGAAGCACAGTACACCTTAGTACTGagccaataaaataataaactgagtTCGGATAAAACCttgttaaatactgtattatgttCTGGTATAGACCGTGGCCAATCCTGTTTACAATTTTTGATACATATTCTACATATACTCAACATTGATTGGTATTAAAATTGCTTTTTGCTTTGGAATCACCCAGGCCTGAAAGCTAAGTTTTGCATATTGTATAGCCCTGCTGTTTTACTGGGACcagaatgttgttgtttttttaacaattcaggattttgctgttattttcttCCAGGTGCTTAGGATTACTGTAcacattttagatttgtattcTTCCTGGAAAAGTAGagggaagaataaaataaaaatggatagTTTCACTATCAGGAAGATAACATAATTGTCTACGATTATTCTGCTTTTAAGAGTAAATTGTTTACTGACATCGTAGTTAGGACGATTGTCCTTTAAACTTTGCTTTAACaacttattttcataattttgcagattatgatttaaaattttAAGTTAAAGTGGAGaattttaacattgtaaaatCAAAGTTGAAGATTTGAATTAAGGCCTACATTTTCTGTAacttacaattattacattaatgtatttaaaaacctCTTTCAGCTGT

Function

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function

KEGG:

id description
K00857 tdk, TK; thymidine kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79396 lncRNA downstream 1038208 21083262 ~ 21083461 (-) True G63447
TU79287 lncRNA downstream 1821826 20288703 ~ 20299843 (-) False AMCG00020446
TU79277 lncRNA downstream 1865270 20255922 ~ 20256399 (-) True G63346
TU79184 lncRNA downstream 2485426 19634294 ~ 19636243 (-) True G63257
TU79099 lncRNA downstream 3043911 19077477 ~ 19077758 (-) True G63180
TU79510 lncRNA upstream 2829 22131002 ~ 22132737 (-) False AMCG00020471
TU79512 lncRNA upstream 2829 22131002 ~ 22131959 (-) False AMCG00020471
TU79614 lncRNA upstream 254191 22382364 ~ 22384918 (-) True G63628
TU79616 lncRNA upstream 255344 22383517 ~ 22391215 (-) True G63629
TU79624 lncRNA upstream 287162 22415335 ~ 22419743 (-) True G63634
AMCG00020466 mRNA downstream 461866 21640654 ~ 21659803 (-) True AMCG00020466
AMCG00020465 mRNA downstream 989558 21108986 ~ 21132111 (-) True AMCG00020465
AMCG00020464 mRNA downstream 1561796 20541518 ~ 20559873 (-) True AMCG00020464
AMCG00020462 mRNA downstream 1657411 20463204 ~ 20464258 (-) True AMCG00020462
AMCG00020463 mRNA downstream 1754677 20363110 ~ 20366992 (-) True AMCG00020463
AMCG00020471 mRNA upstream 2669 22130842 ~ 22131914 (-) True AMCG00020471
AMCG00020478 mRNA upstream 17620 22145793 ~ 22164159 (-) True AMCG00020478
AMCG00020476 mRNA upstream 37606 22165779 ~ 22184597 (-) True AMCG00020476
AMCG00020475 mRNA upstream 68262 22196435 ~ 22214941 (-) True AMCG00020475
AMCG00020477 mRNA upstream 88396 22216569 ~ 22223699 (-) True AMCG00020477
TU79413 other downstream 809064 21312202 ~ 21312605 (-) True G63464
TU78822 other downstream 4081709 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 4105809 18006168 ~ 18015860 (-) True G62961
TU78823 other downstream 4124652 17994544 ~ 17997017 (-) False AMCG00020403
TU78680 other downstream 4495480 17610664 ~ 17626189 (-) True G62853
TU79676 other upstream 415669 22543842 ~ 22544689 (-) True G63679
TU79847 other upstream 1026519 23154692 ~ 23161900 (-) True G63819
TU80215 other upstream 2548574 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 2982937 25111110 ~ 25112551 (-) True AMCG00020581
TU80367 other upstream 2992925 25121098 ~ 25139385 (-) False G64247

Expression Profile