RNA id: AMCG00020475


Basic Information

Item Value
RNA id AMCG00020475
length 3987
RNA type mRNA
GC content 0.42
exon number 18
gene id AMCG00020475
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 22196435 ~ 22214941 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gacaatgacaatgttGCTTTTTTGATTGAATGACCCAGGATTTGCAGTCAGACATCAACCCTGTTGCTGGAGGGGCCCAGTGATTTTAGGTGTCCTCAGTCACGCAagtatttgtaatatgaatatttaaaataaatctagtatatgtaattataatacaaacagAGTATTTCTTCAGAAAACGTGCCAAATCCTGGAGAACAGAGTAGCAATGGAAGTTTCAAATCAAGACGGAGGAAGGCGACTTTGTGGTGATATTGTAGATTATTTCAGAGATATCGGAGGACTGCTGTTTCTGTTCAAGCTTTCCAAATCTGTAGCGAATGTCGAAGTAAAGGAGGCGGCCCTCTTTACATTAGGAGGTTTAGCTGAGAGCAATGTTTTTTGCAAGCAAGTGTTGTGTAGCACAGACCTTTTTACTGAATTATCCCAGTCACTATCACCGGACTCTCCACTGAACCTTAAAAGGGTAGCAGTTTACATGGTGTCAGTGCTAGTCATCAACAACAAGTCTGGCCAAACTCTTGTTAAAACTACAGGCTGCATTGACATCCTCTTGAATTTATTCAGAACAAGTTTTCCTATCTCGCATGACAACATGAGACAAGCCAACATTACCCAAAGCTACCAGCTGTGGACATCTGTGTCCAATGCTCTGTGTGGCTGTGTCAATAACCCACAGAATGAAGAGAACCAACGAATATGTGCATCTGCCTTTCCCGTTTCAAATGAGTGGCTACAGAAATGTGTTAGGAAAGAAATAATACAGCCAATTTGCACCTTTATAGGGATGACTGTGTCAGATAATGCCTATGCTCAGGGCTGCTTTGCCGCAGCCGGAGGATTAGACACGCTGACGCAGAATCTGGTGAAACTGGCAAGCAACTGCAGCACGAGCCCCTCTGCATGTGATCTTGTAGTTGTGATGACAAAGACCCTGTGTGCTTGCATAGCTGATAATGCTCACCTCTCTTCAACGCTACCACAGTATCATCTGGTCCCCAAGCTTGTGTCACTGGTTTCTAGTCAGATCTTTAATTCAGAAGACCTGCTGTGTATTGTTCTTGCTCTAGGTCTTTGTACTGAAGCCTGTGAGGAGCATCAGATTCAGCTGCTGCAGAGTGGTGGTCTCCCCCAGATGATTCAGTTGCTGACGGCACCGCAAGATGAGGAAGTGAAACAGGCAGCCACTTTTGTTCTACAAACCTGCAAACAAATTAcTGAAAATCTAGCACCAGACCTTAGTGAGCAGCCCTGCCAGGTGCCAGGCAAATCTCACCGTAACCTGCAAAGTTACCAGAAGTCAGCGAGTGCAATGTGGGAGAGGTTGGATATTTTAGAGAAGATGCATGCTGAGGCTATGCAGGTGAATGTTGATGAGTTTGAGAACAATGGGGAGAATTCCTGTGATGAGTTTTTGGGATCCATGGTCACTGCACAGTTTGGGGAGATGGAAGAAATACGTCAGAACCTCTCTTCAGGCTCTGCTGTGGAGTCATGCTCGGGAACCCCGGTGAGAAAAGTGAAAGGACAGCCCAAAGCAAGGGACAAGATCTTTCACTGGTGTAATATCATGATGGAGAACAGAGAACACACCCCTGATCACTCCATACCAGCAGACATCAAGGTTAAAAGAGGCATTCGCATTCGGGGAGACGCAGAAGGAAACGGGACAAGGAACCAAAACAAGTGTCTTGCGGACCGAGTTAAGAAGAGGATATTCAGTGCAAACAGTGAACTACAAAACATGGTGGACAAAGCTGAGCAGTGGCCCCAGGTGAGCTCAGCTCACTGTAGCAGAGAGGAGCTAGAGCCAGAGAGAGGCCATGGTGCGGCAAAGCCACGGGCTGGGTCTGTGTGTGCCTCGGAGCCTGTGGATCAGCAGGAAAATGCCTCTCACAGGATCCCTCTCGACACACTGCCGGCTCTCTGCTCATCCTCACAGACAGCCAAGACAGCAAGAGCACTAGACAGAGAGCACAGACCCCAGTCAGAGAGtcAAATTGATTTCAAATGTCCCGCTCCAGTtaagaaaagcaacaaaaccCAGAAGCAAACTAGGATTTCTGTAGAAGATCATTTCAGCATATGTTCAGAAGTTCTAGACCATGAAATCGACAATATCCTGAAAACGCCAGCATTGGTGAATCAGCATAAAACCTTTCGGTGTTCAGGGATTACATTGACTCCTCAAAAGAAATCTTGCAACACTGaagaTAAGGGCAAAAGGACACAGCAAAGAGAGGACACGACAGTTGACCTCCAAGAGACAAAGGATGGAGATCTCtacacattttatGATTCAGGTGACTCTCAGTCCAATGCCTCATACAAGACCCAGGTGGCcaggaggagaaacaggaagaaCTTCAGTGCAGAGGAAGTAGGCTATTTGTTGGATGGAGTAAAGAACCTGGGTTATCACTGGAATTCAATACTTTGGTCTTACCCCTTCCACAAAGGAAGGACCAATGTGGACTTGGCAAAGAAATATAaaggaaaacaaagtggAAGTGTTCTCAAATAACCAAGACCACCAACATATCATGAATGTATTTAGGAAATAATGATATGTGTGCAACTCATTTCACATGTTTTCTGCACCCTTTTGTCATTTAGttctcttaaaatgttttttctcccccactGCTATCAAAGTGTACACAAGGGTTGTCGGTTGAGCACGAAGTAAACATTAGAATTCTTAATTGATTCTCCTATTAAAGTGCATCAGTAGGGTCCTGGAGTctgcttcaaaacaaaaagcttgCATACCCTTCCAGAAAAGGGGATGCTCGAGACTAGTTTTCACTCCAAGCATGCAGAATTGtataaagagaaaatgtaacCGGCAGAAACCATGATTTGTTGATTGAAAGTCAGATATAAACACAGTATTAAGGGTCTGTGAAAATACCCAGGGCAATGTAGaatgtaattttaacattaatcATAACATTGCCGATTTGCAACTAACCAAATTCATGTAATGCATGTTTCATTTCCCAGTTGAAAATGTTATTGTCACCTTAAACCCTGGAATAAGCTTGTATACAGCCATTCCatcataaatattttttgtctcCTGAATTTGTAAATCTAAAATCAATTCACTGCATTCATAGAAATAAACTGTGCAAATGACAGGTAGCTAAGAATCTTTTGCAGAGCAATGTTTCCTTGAATCATTGTTTCCCCCCATTAAGTCACAGACCAAGCACACCACCGATTCCctcaagaaaatgttttcttgtatgCTAGCATTATATAACAAAAGCCACAGAGTAATGGAATCACTTTGCCTTAGGATTTTGGAATTGGAAAGAATGAAGAAGGCAAAGTACCCTgagtttttccagtttgttttatttcttgttgaGGAACGGACAGTAGAAAGACTTAAGCTTAAGGCTGCTAGTCTTGGATGTAAATAGTTTAGAACTTGGGTGAAACCAATCCTAGAAGAAACTAGGCTACCACAAACTTAGTCCAACATCCCTGTATTAACTCTGGGATAAACAGGGACATGGTGTGAAATCagttctcattttcttttaatctatACATGTGTCCAAGCAGTAGTTCCATAacactcccctcccccacagATAAACAATGGACCAGATTTGTTACAACTGCTCCCTGCAACATTACTGGATCTGCTGGAGATTAGGCCtaaaccaaaatcaaaactaaatcgcaaagtacaaacctttaaatttggtttacatttttttgtagtaaaaagtggcttctgacaataacaAACTACAATTGGATACAAATTTGCAATTCATAACTCACTGGTAGAggaacattttgatttggtttaggcTTTAGTTATAGGAAATCTAGAGGTGCGTTTCTTTGTACACTGGAAGTAATGGACTAATACCAGAACTTAAACCAGCCCTAACTGCCACCcctttatatatgtgtatcactttaaaataaatattacatggatttataaaaaataaaaatctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79510 lncRNA downstream 63698 22131002 ~ 22132737 (-) False AMCG00020471
TU79512 lncRNA downstream 64476 22131002 ~ 22131959 (-) False AMCG00020471
TU79396 lncRNA downstream 1112974 21083262 ~ 21083461 (-) True G63447
TU79287 lncRNA downstream 1896592 20288703 ~ 20299843 (-) False AMCG00020446
TU79277 lncRNA downstream 1940036 20255922 ~ 20256399 (-) True G63346
TU79614 lncRNA upstream 167423 22382364 ~ 22384918 (-) True G63628
TU79616 lncRNA upstream 168576 22383517 ~ 22391215 (-) True G63629
TU79624 lncRNA upstream 200394 22415335 ~ 22419743 (-) True G63634
TU79666 lncRNA upstream 225851 22440792 ~ 22446550 (-) True AMCG00020489
TU79677 lncRNA upstream 330827 22545768 ~ 22546057 (-) True G63680
AMCG00020476 mRNA downstream 11838 22165779 ~ 22184597 (-) True AMCG00020476
AMCG00020478 mRNA downstream 32276 22145793 ~ 22164159 (-) True AMCG00020478
AMCG00020471 mRNA downstream 64521 22130842 ~ 22131914 (-) True AMCG00020471
AMCG00020472 mRNA downstream 68262 22121669 ~ 22128173 (-) True AMCG00020472
AMCG00020466 mRNA downstream 536632 21640654 ~ 21659803 (-) True AMCG00020466
AMCG00020477 mRNA upstream 1628 22216569 ~ 22223699 (-) True AMCG00020477
AMCG00020483 mRNA upstream 55773 22270714 ~ 22307475 (-) True AMCG00020483
AMCG00020482 mRNA upstream 106144 22321085 ~ 22324965 (-) True AMCG00020482
AMCG00020488 mRNA upstream 138005 22352946 ~ 22354526 (-) True AMCG00020488
AMCG00020489 mRNA upstream 229364 22444305 ~ 22466767 (-) False AMCG00020489
TU79413 other downstream 883830 21312202 ~ 21312605 (-) True G63464
TU78822 other downstream 4156475 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 4180575 18006168 ~ 18015860 (-) True G62961
TU78823 other downstream 4199418 17994544 ~ 17997017 (-) False AMCG00020403
TU78680 other downstream 4570246 17610664 ~ 17626189 (-) True G62853
TU79676 other upstream 328901 22543842 ~ 22544689 (-) True G63679
TU79847 other upstream 939751 23154692 ~ 23161900 (-) True G63819
TU80215 other upstream 2461806 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 2896169 25111110 ~ 25112551 (-) True AMCG00020581
TU80367 other upstream 2906157 25121098 ~ 25139385 (-) False G64247

Expression Profile