RNA id: AMCG00020477


Basic Information

Item Value
RNA id AMCG00020477
length 1607
RNA type mRNA
GC content 0.44
exon number 20
gene id AMCG00020477
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 22216569 ~ 22223699 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGGGAAGGAGGAAGATTACCAGTCTGAGCTACAATGATGGCTGACAGCTCCAAAGGAAAAGCAACTAAAGAGCAGAAATACGACAGACAACTCAGATTATGGGGTGACCATGGCCAGGAAGCATTGGAAAATGCACACGTATGTTTGATCAATGCCACAGCATCAGGGACAGAGATACTCAAGAACTTGGTGCTTCCAGGTATTGGGGCATTTACCATTGTAGATGGTCACAGAGTCAGTGGAGAAGATGTTGGAAACAActTCTTTCTGAGTAAGAGCAGCATTGGCAAGAATCGGGCTCAGGCGGCAACAGAGCTATTACAGGAACTGAACAGCGATGTTTCTGGAAATTTTGTTGAGGAGaCCCCAGAACAGCTCCTAGACAATGACCCTGGGTTTTTCCATAGATTTAACCTGGTAATTGCTGTTCAGTTACGAGAAAGCACAACTTTACGATTAGGCGCAGTTTTGTGGAATGCTGGAGTTCCTTTTCTGATCTGTAGGACCTATGGGCTGGCTGGTTACATGAGGCTGGTTGTGAAAGAACATACAGTTGTAGAATCTCATCCAGATAATGCCCTGGAGGATCTGAGGCTAGACCATCCATTTGAAGAACTCAAAAAGCACATTCAGTCTTATGATCTGCAGAGTATGGACAAGAAGGATCACAGTCATACACCTTGGATCATTGTGGTTGCCAAGTATCTAGAAAAGTGGTGCAGTGAGCATGATTCCCAAGTACCTAAGAATtataaagaaaaggaagctttcCGGGAACTTATCCGTCAAGGAATACGTAAGAATGAGAATGGAGTTCCTGAAGATGAAGAAAATTTTGAGGAAGCTGTAAAAAATGTCAACACTGCCCTGAACCCTACAAAGATCTCAAGCacaattgaagatatctttaatgCTGACCAGTGCAAGAATATAACAGCACAGAGTACATCATTCTGGGTAATGGCTCGGGCAGTGAAGGAGTTTGTGCACAACGAAGGCGGGCAGAACCTTCCAGTGCGGGGAACCATCCCTGACATGATTGCAAATTCGGATAAATTCATCAGCCTCCAGAACGTTTACCGGGCGAAGGCAAAGCAGGATGCTGCTGCTTTACCAGAGAGCATTTCGGAGCAAGAAATCAGACTTTTCTgtAAAAATACAGCTTTCCTGAGAGTTGTTTGCTGCAGGTCACTGGCTGAAGAGTACAGTGTGGAATCCATTAACAAAGACGAAATCACATCGTGCATGGACAATCCAGACAGTGAGATGGTGCTATATCTCATGCTACGTGCTGTTGACCGCTTTTTCCAGCAACACTCTCGATACCCAGGTGTTTATAACTACCAGGTTGAAGAAGATATTGGCAAGCTGAAGTCTTGTGTGAACAGCCTTCTTCAAGAATATGGcctgaatgtaaatgtaaaagatgACTACATTCATGAATTCTGTCGTTATGGTGCTGCAGAACCACATACAGTAGCTTCTTTAATGGGAGGATCTGCTGCTCAGGAGGCGatcaaaacaataacacaccAGTTTGTACCTttcaacaacacatttatttacaatgcaaTGTCACAGACGTCAGCCACTTTTCagctataa

Function

GO:

id name namespace
GO:0045116 protein neddylation biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K04532 NAE1, APPBP1; NEDD8-activating enzyme E1 regulatory subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79510 lncRNA downstream 83832 22131002 ~ 22132737 (-) False AMCG00020471
TU79512 lncRNA downstream 84610 22131002 ~ 22131959 (-) False AMCG00020471
TU79396 lncRNA downstream 1133108 21083262 ~ 21083461 (-) True G63447
TU79287 lncRNA downstream 1916726 20288703 ~ 20299843 (-) False AMCG00020446
TU79277 lncRNA downstream 1960170 20255922 ~ 20256399 (-) True G63346
TU79614 lncRNA upstream 158665 22382364 ~ 22384918 (-) True G63628
TU79616 lncRNA upstream 159818 22383517 ~ 22391215 (-) True G63629
TU79624 lncRNA upstream 191636 22415335 ~ 22419743 (-) True G63634
TU79666 lncRNA upstream 217093 22440792 ~ 22446550 (-) True AMCG00020489
TU79677 lncRNA upstream 322069 22545768 ~ 22546057 (-) True G63680
AMCG00020475 mRNA downstream 1628 22196435 ~ 22214941 (-) True AMCG00020475
AMCG00020476 mRNA downstream 31972 22165779 ~ 22184597 (-) True AMCG00020476
AMCG00020478 mRNA downstream 52410 22145793 ~ 22164159 (-) True AMCG00020478
AMCG00020471 mRNA downstream 84655 22130842 ~ 22131914 (-) True AMCG00020471
AMCG00020472 mRNA downstream 88396 22121669 ~ 22128173 (-) True AMCG00020472
AMCG00020483 mRNA upstream 47015 22270714 ~ 22307475 (-) True AMCG00020483
AMCG00020482 mRNA upstream 97386 22321085 ~ 22324965 (-) True AMCG00020482
AMCG00020488 mRNA upstream 129247 22352946 ~ 22354526 (-) True AMCG00020488
AMCG00020489 mRNA upstream 220606 22444305 ~ 22466767 (-) False AMCG00020489
AMCG00020492 mRNA upstream 250594 22474293 ~ 22512944 (-) True AMCG00020492
TU79413 other downstream 903964 21312202 ~ 21312605 (-) True G63464
TU78822 other downstream 4176609 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 4200709 18006168 ~ 18015860 (-) True G62961
TU78823 other downstream 4219552 17994544 ~ 17997017 (-) False AMCG00020403
TU78680 other downstream 4590380 17610664 ~ 17626189 (-) True G62853
TU79676 other upstream 320143 22543842 ~ 22544689 (-) True G63679
TU79847 other upstream 930993 23154692 ~ 23161900 (-) True G63819
TU80215 other upstream 2453048 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 2887411 25111110 ~ 25112551 (-) True AMCG00020581
TU80367 other upstream 2897399 25121098 ~ 25139385 (-) False G64247

Expression Profile