RNA id: AMCG00020483


Basic Information

Item Value
RNA id AMCG00020483
length 2388
RNA type mRNA
GC content 0.45
exon number 13
gene id AMCG00020483
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 22270714 ~ 22307475 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGGAACTGTCCAATTGGGGTTGATAACCGGGGCTTCCACCCTGAACTCTGAGGTATGCAGTCTGTACAACCTGACAGTGATGGTCAAAGACATGGGAGGAAAACCCACTGGATATTTTTCAACTGGCACTTCCAAGGTAGATGTCACTGAAAACACATGGACCGCATTACAGCCTGTTCATCTGCAGGAGAACCTGCCCGGCCCCTATCCAAAAGCAATCTCCCAGGCTCAATGGAGTGGCAGCCAAGTCGAGTACAGCCTGGAAGGAGACTTCCCCGATATGCTCTTCTACATCGGCAAGGAGGGGGTGATCTATCTGACCGGTCCTctagacagagaggagaggccTGAGTTCCAGATAAAGGTTTTTGCAGAGAGGCCTGATGGCAGAGTGATGGCTGAGCCCCTGGAGCTGCTGGTCATGGTAGGGGACAAGAACGATAACAAGCCCATCTTCTCTCAGACCGAGTACCACGTGGTCATCACGGAGCACGCCACTCAGGgGACAGAAATTATCAAAGTTCAGACTACTGATGCAGATGATCCAAATACAGAACATGTAAATATCAGCTATAAAATCGTCAGTCAAACACCTGAAAGCCCAGAGCCTTTATTCCAAGTCAACCAGAAATCTGGGGCCATCATACTAGAGGCGGAAAGTCTGGAGAAAGCAGCATCTCAGTACACTCTAAAACTGACAGCAGTGGACCTGGGGGGCAAGGAAGAAGGCCCTCGTGCGGAGGAGATCAGAGGGAGAGTAGCTTTAGTGGTTAATGACTATGCCAAAGTGGGTCTCCTGGTCACCACAATCACAGCCTCCGATGAGGATAAGCCCAGCACAGATGGCTGGTTTGTGGATTATACAATAGGGTCTGGAAATGAAGAGGAAACCTTTAGACTactgacagacaggcagaccAATGAAGCCTCCTTAATCCTGCAGAAGACGCTTGACTATGAGCATGTGCAGGAGTACGTCCTAGTGCTCAGTGCCAGGAACGTAGAAGCCCTAGTTGGTGGAGTGTATGGGCCCGAATCCACCGCAACAGTGTCTATTCAAGTGGAAAATGTCAATGAGATGCCCATCCTTCCCAAGAGCCACTATGAGGTGACAGTGAGTGAGGAGGAACAAGCTGGGCAAATCCTCCTCAAAATACAGGCTATAGACCCAGACAGCACAATAAGataTTCTTTAAAAGGAGACACTAAGAATTATTTCACAATTGATGAGGACACTGGGGAGATAAAGACAGTTCAAGTTTTAGATAGGGAGGAAGACAGCACCTATACTATGGAGGTTGTGGCAGAGGACCGAGAGAACGCCTCTCTGCTTTCATCTGCTGTGGTGACCGTGCACATTCAGGACGTGAATGATAACACCCCGGTCTTGGTGGGCGATTACTCCTGGAAGTACCTGTGTACTCCGAAGTGGGAGGACCAGGCCCTGGCCATTGCATCCAATGACAATGATGGACCTCAGCACAGTGGCGTGCTCCACTTTGCACTCAAACCAGACCCCACCATACGGCGCAATTGGAAACTCACCCCTATCAACGGTACCCATGCAAATCTTTCCATGCAGACCAGTTACTTGACCCCTGAAGTCTACATGGTTCCCATTATAATCTCAGACAGTGGTTCACCCACAAAAAACACCCACATCAATCTCCCAGTAACCGTGTGCCAGTGCAATATAAGAGGGAACTGCAGGACTGCTGTCAAGGAGCTGCAGGGCATGCCCACTGTACAGTCTGCTGTTGGCATCCTCCTGGGCACCCTTGGGGTTATAGGGTTTATTCTCATTATCGTCTTCGCAAAGCTGTCTTATCAGAAACCGAAGCCTCAAAGCATCAGCAACCAAGACAGAGTGCCTTTGAAAAGCTCTGTCTAGATCAATCCAGTGGAGGACTATAAATGTACAGAATGGAATGAaatgtactgtgtactgtgggGCACAACACAGCTTTTGAGAGAGGtgatttttgttaataaattatcaaatgattaaattatgaattttaAAAGGCATAAATAGATCCTTTATTAAATGGAATGGTCTGCATCTATCTGCATTAATAATCTAAATCTTAATCTGACctccttttatatatatttttttacacaaaatatcaTGTTATCCATGAGTTCTGTATAAAGCAGGCTCAAGGTAATTGATCACTTTTGAGTTGATtgtaatagtaaataaatattgatcaacttaaaaaagaaaatatgtcgTGTAATTTACCATTAAACATTTCACTAGCTGTGTAATCACATCTTTAATGCAACATTCAAAACtgtctatttttaatgtaaagctgttattttttcctacagtaatacatttaaatttaatacattttgtcttcttgatatttca

Function

GO: NA

KEGG:

id description
K06810 CDH16; cadherin 16, KSP-cadherin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79510 lncRNA downstream 137977 22131002 ~ 22132737 (-) False AMCG00020471
TU79512 lncRNA downstream 138755 22131002 ~ 22131959 (-) False AMCG00020471
TU79396 lncRNA downstream 1187253 21083262 ~ 21083461 (-) True G63447
TU79287 lncRNA downstream 1970871 20288703 ~ 20299843 (-) False AMCG00020446
TU79277 lncRNA downstream 2014315 20255922 ~ 20256399 (-) True G63346
TU79614 lncRNA upstream 74889 22382364 ~ 22384918 (-) True G63628
TU79616 lncRNA upstream 76042 22383517 ~ 22391215 (-) True G63629
TU79624 lncRNA upstream 107860 22415335 ~ 22419743 (-) True G63634
TU79666 lncRNA upstream 133317 22440792 ~ 22446550 (-) True AMCG00020489
TU79677 lncRNA upstream 238293 22545768 ~ 22546057 (-) True G63680
AMCG00020477 mRNA downstream 47015 22216569 ~ 22223699 (-) True AMCG00020477
AMCG00020475 mRNA downstream 55773 22196435 ~ 22214941 (-) True AMCG00020475
AMCG00020476 mRNA downstream 86117 22165779 ~ 22184597 (-) True AMCG00020476
AMCG00020478 mRNA downstream 106555 22145793 ~ 22164159 (-) True AMCG00020478
AMCG00020471 mRNA downstream 138800 22130842 ~ 22131914 (-) True AMCG00020471
AMCG00020482 mRNA upstream 13610 22321085 ~ 22324965 (-) True AMCG00020482
AMCG00020488 mRNA upstream 45471 22352946 ~ 22354526 (-) True AMCG00020488
AMCG00020489 mRNA upstream 136830 22444305 ~ 22466767 (-) False AMCG00020489
AMCG00020492 mRNA upstream 166818 22474293 ~ 22512944 (-) True AMCG00020492
AMCG00020493 mRNA upstream 245373 22552848 ~ 22579832 (-) True AMCG00020493
TU79413 other downstream 958109 21312202 ~ 21312605 (-) True G63464
TU78822 other downstream 4230754 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 4254854 18006168 ~ 18015860 (-) True G62961
TU78823 other downstream 4273697 17994544 ~ 17997017 (-) False AMCG00020403
TU78680 other downstream 4644525 17610664 ~ 17626189 (-) True G62853
TU79676 other upstream 236367 22543842 ~ 22544689 (-) True G63679
TU79847 other upstream 847217 23154692 ~ 23161900 (-) True G63819
TU80215 other upstream 2369272 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 2803635 25111110 ~ 25112551 (-) True AMCG00020581
TU80367 other upstream 2813623 25121098 ~ 25139385 (-) False G64247

Expression Profile